Detailed information NTG0219764

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: C1I23_RS05210
• Genome accession: NZ_CP025747
• Coordinates: 1006115..1007107 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain ML35
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1001115..1012107

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C1I23_RS05180 (C1I23_05205)	ispD	1001176..1001886 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
C1I23_RS05185 (C1I23_05210)	ispF	1001886..1002365 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
C1I23_RS05190 (C1I23_05215)	truD	1002362..1003411 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
C1I23_RS05195 (C1I23_05220)	surE	1003392..1004153 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
C1I23_RS05200 (C1I23_05225)	pcm	1004147..1004773 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
C1I23_RS05205 (C1I23_05230)	nlpD	1004958..1006052 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
C1I23_RS05210 (C1I23_05235)	rpoS	1006115..1007107 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
C1I23_RS05215 (C1I23_05240)	ygbN	1007201..1008565 (-)	1365	WP_000104459.1	GntP family transporter	-
C1I23_RS05220 (C1I23_05245)	ygbM	1008654..1009430 (-)	777	WP_001136925.1	HPr family phosphocarrier protein	-
C1I23_RS05225 (C1I23_05250)	-	1009435..1010010 (-)	576	WP_102597128.1	aldolase	-
C1I23_RS05235 (C1I23_05260)	-	1010637..1011242 (+)	606	WP_102597129.1	CDP-glycerol glycerophosphotransferase family protein	-
C1I23_RS25920	-	1011285..1012073 (+)	789	WP_158649438.1	hypothetical protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=219764 C1I23_RS05210 WP_000081550.1 1006115..1007107(+) (rpoS) [Escherichia coli strain ML35]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=219764 C1I23_RS05210 WP_000081550.1 1006115..1007107(+) (rpoS) [Escherichia coli strain ML35]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715