Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   BUM88_RS17855 Genome accession   NZ_CP020000
Coordinates   3699535..3699981 (-) Length   148 a.a.
NCBI ID   WP_080027881.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain CA16     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3694535..3704981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BUM88_RS17840 (BUM88_17840) - 3697241..3697987 (-) 747 WP_080027878.1 PilX N-terminal domain-containing pilus assembly protein -
  BUM88_RS17845 (BUM88_17845) - 3697987..3699015 (-) 1029 WP_080027879.1 PilW family protein -
  BUM88_RS17850 (BUM88_17850) pilV 3699017..3699538 (-) 522 WP_080027880.1 type IV pilus modification protein PilV -
  BUM88_RS17855 (BUM88_17855) fimU 3699535..3699981 (-) 447 WP_080027881.1 pilus assembly FimT family protein Machinery gene
  BUM88_RS19955 - 3699887..3700187 (+) 301 Protein_3468 hypothetical protein -
  BUM88_RS17860 (BUM88_17860) ispH 3700153..3701103 (-) 951 WP_080027882.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  BUM88_RS17865 (BUM88_17865) gmk 3701226..3701855 (+) 630 WP_080027883.1 guanylate kinase -
  BUM88_RS17870 (BUM88_17870) rpoZ 3701928..3702206 (+) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  BUM88_RS17875 (BUM88_17875) - 3702415..3704520 (+) 2106 WP_080027884.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 15915.25 Da        Isoelectric Point: 8.5206

>NTDB_id=219739 BUM88_RS17855 WP_080027881.1 3699535..3699981(-) (fimU) [Acinetobacter calcoaceticus strain CA16]
MRGIIPQEGFTLVELMVTIAVMAIIAMMAAPSFTQLMAKQRLNANTRELISTLSQGRSQAVLLRTNVTVHLADGTNTNTD
FYWEPTSGNRVTAPTSISSITFGRDGALVLGISADTDFVICNSTAKTQKSFALTRMGTVYSKNDGTCS

Nucleotide


Download         Length: 447 bp        

>NTDB_id=219739 BUM88_RS17855 WP_080027881.1 3699535..3699981(-) (fimU) [Acinetobacter calcoaceticus strain CA16]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTTGAGCTCATGGTGACGATTGCGGTAATGGCTATTATCGCAAT
GATGGCTGCGCCGTCTTTTACTCAACTCATGGCGAAACAAAGATTAAATGCGAATACGAGAGAGCTGATCTCAACCTTAT
CTCAAGGGCGTAGCCAAGCTGTTTTATTAAGAACAAATGTTACTGTCCATTTAGCTGATGGAACCAATACAAATACAGAT
TTTTATTGGGAGCCCACGTCAGGAAATCGAGTAACTGCTCCAACATCAATAAGTAGTATTACTTTTGGTAGAGATGGAGC
GTTAGTTTTAGGTATTTCTGCTGACACGGATTTTGTAATTTGTAACTCAACAGCTAAAACTCAAAAATCCTTTGCGTTAA
CTCGGATGGGAACTGTTTATTCAAAAAACGACGGAACTTGCTCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

47.468

100

0.507

Multiple sequence alignment