Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   BUM88_RS17125 Genome accession   NZ_CP020000
Coordinates   3562974..3563858 (-) Length   294 a.a.
NCBI ID   WP_080027816.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain CA16     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3557974..3568858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BUM88_RS17110 (BUM88_17110) miaB 3559535..3560986 (+) 1452 WP_056482674.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  BUM88_RS17115 (BUM88_17115) - 3561024..3562112 (+) 1089 WP_003653596.1 PhoH family protein -
  BUM88_RS17120 (BUM88_17120) ybeY 3562390..3562872 (+) 483 WP_005038517.1 rRNA maturation RNase YbeY -
  BUM88_RS17125 (BUM88_17125) tonB2 3562974..3563858 (-) 885 WP_080027816.1 energy transducer TonB Machinery gene
  BUM88_RS17130 (BUM88_17130) - 3564091..3564762 (+) 672 WP_080027817.1 hypothetical protein -
  BUM88_RS17135 (BUM88_17135) - 3564921..3565634 (+) 714 WP_080027818.1 DUF3108 domain-containing protein -
  BUM88_RS17140 (BUM88_17140) - 3565706..3566281 (+) 576 WP_004639480.1 xanthine phosphoribosyltransferase -
  BUM88_RS17145 (BUM88_17145) wrbA 3566331..3566939 (-) 609 WP_005038513.1 NAD(P)H:quinone oxidoreductase -
  BUM88_RS17150 (BUM88_17150) - 3567302..3568549 (+) 1248 WP_005038511.1 YihY family inner membrane protein -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33553.06 Da        Isoelectric Point: 8.4071

>NTDB_id=219734 BUM88_RS17125 WP_080027816.1 3562974..3563858(-) (tonB2) [Acinetobacter calcoaceticus strain CA16]
MLNKRSLSIEPFYHWWQDRVFIVATILAVLLHIFVLLIHFAMPSPSEQSTKEIAISIRSSNEPVQQADFLAQADQQGSGA
FREAHRTSSDTPNPMSNDASTGEAQLETLQKVQQQRELKFEEKVLMTVLSWQKQADASQRKKELEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKVQQLKGEVRLMVILNAQGGIRAIRL
LESSGHSVLDEAAKSSVRRGAPFGHFDTNMKDISELRIVRTWRFDPAQAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=219734 BUM88_RS17125 WP_080027816.1 3562974..3563858(-) (tonB2) [Acinetobacter calcoaceticus strain CA16]
ATGTTGAACAAAAGAAGTCTATCGATAGAGCCTTTTTATCATTGGTGGCAAGACCGAGTCTTTATTGTTGCGACAATATT
GGCAGTCTTACTGCATATTTTTGTGTTGCTCATTCACTTTGCGATGCCTAGCCCATCAGAGCAATCTACTAAAGAAATTG
CAATTTCTATTCGATCAAGCAATGAGCCAGTGCAGCAGGCAGACTTTTTGGCGCAAGCAGACCAGCAAGGTTCTGGTGCA
TTTCGAGAAGCCCACCGTACCTCTAGTGATACTCCAAATCCCATGTCTAATGATGCTTCAACTGGAGAGGCTCAGTTAGA
AACTTTGCAAAAGGTTCAGCAGCAAAGAGAGCTTAAATTTGAAGAAAAAGTCTTAATGACTGTTTTGAGTTGGCAAAAAC
AAGCTGACGCCAGTCAAAGGAAAAAAGAATTAGAACAATTACAAAGTCAATTTCAGGCAAAAGCTGCGATGGTTGCAAGT
CTCGAAGCACAGTATTTACAACGCCAACAGGATTTTAGCCGCCAACAAAAAATAAAAACAGTAGATGGAATTCAGGCGAA
AAAAGATGCCTCGGCTGCTTATTTAGATAAGTTCCGTGAGAAAGTGGAGTTGTATGGTAATCGCTATTATCCAGAAGAAG
CCAAAGTTCAACAGTTGAAAGGCGAAGTTCGTTTAATGGTTATTTTAAATGCACAAGGAGGGATTCGTGCAATTCGGTTG
CTTGAGAGCTCAGGGCATTCGGTATTGGATGAAGCTGCAAAGTCTTCAGTACGTCGCGGCGCACCATTTGGACATTTTGA
TACCAATATGAAAGATATTTCTGAATTGCGTATTGTACGTACTTGGCGTTTCGATCCCGCTCAAGCAGAATTTGAAGTGC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

89.456

100

0.895

Multiple sequence alignment