Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   BUM88_RS01775 Genome accession   NZ_CP020000
Coordinates   372729..374957 (-) Length   742 a.a.
NCBI ID   WP_080026222.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain CA16     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 367729..379957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BUM88_RS01755 (BUM88_01755) - 367915..368871 (-) 957 WP_080026218.1 DnaJ C-terminal domain-containing protein -
  BUM88_RS01760 (BUM88_01760) - 369018..369629 (-) 612 WP_080026219.1 LysE family translocator -
  BUM88_RS01765 (BUM88_01765) hslO 369768..370643 (-) 876 WP_080026220.1 Hsp33 family molecular chaperone HslO -
  BUM88_RS01770 (BUM88_01770) - 370808..372652 (-) 1845 WP_080026221.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  BUM88_RS01775 (BUM88_01775) priA 372729..374957 (-) 2229 WP_080026222.1 primosomal protein N' Machinery gene
  BUM88_RS01780 (BUM88_01780) gspF 375106..376311 (+) 1206 WP_005045048.1 type II secretion system inner membrane protein GspF -
  BUM88_RS01785 (BUM88_01785) gspG 376335..376919 (+) 585 WP_167370587.1 type II secretion system major pseudopilin GspG -
  BUM88_RS01790 (BUM88_01790) - 377188..377532 (+) 345 WP_003654643.1 hypothetical protein -
  BUM88_RS01795 (BUM88_01795) - 377597..377860 (-) 264 WP_003654645.1 DUF2798 domain-containing protein -
  BUM88_RS01800 (BUM88_01800) - 378104..378442 (+) 339 WP_080026224.1 tRNA-binding protein -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 84120.99 Da        Isoelectric Point: 8.5633

>NTDB_id=219715 BUM88_RS01775 WP_080026222.1 372729..374957(-) (priA) [Acinetobacter calcoaceticus strain CA16]
MTITPKPDSVVYRVRVAVPVHLYDTFDYTLTEAQYERAQVGSRVAISFGRQNLIGIITEKVNPHEPFTGNFQLKAISELL
DEQPILDEQVLSLLTWSAQYYQFPVGEVMQTALPAILRQGKPMDVLFHLWKITPCDNVEALLKRSVKQQDAYQILKLHPA
GTTENILNLSGVETATLKALEKKGLVECTLEPHDFSPTPVQLAQMPLTLNEDQKQATQQVIKAQHQYQAFLLDGLTGSGK
TEVYLHIMHEVLKQGKQVLVLVPEIGLTPQTISRFKSRFNCDIALLHSGLNDSKRLQAWQQAQTGKASIILGTRSAIYTP
LPRLGLIILDEEHDLSYKQQEGFRYHARDVALYRGHLQSCPVILGSATPSIDSYYLVETGKLTSLQLNKRAGHALLPKMH
LIDLKIVKKQHGISQPLIEQIKHTLARKEQVLIFLNRRGYAPVLVCESCGWQANCPHCDAHFTLHTQPYSYLHCHHCGTI
HRLPDHCPECQQKSLKTLGAGTAKVEEHLQELFPEHDVIRVDRDSTSRVGSWQKIYDRIHQNKPTILLGTQMLAKGHHFP
HVTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGHVYLQTLRPDHPLLTTLIEKDYRAVAKQTLAERKVAL
LPPYRYAVLIRAESKDRDYTLHFLNEAAEQLRQVAGEIVDIWGPIPAPMERKAGRYRAHMVILSADRARLHFYLRQWWSQ
LVHAPRQHQLRLSIDVDPQEFN

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=219715 BUM88_RS01775 WP_080026222.1 372729..374957(-) (priA) [Acinetobacter calcoaceticus strain CA16]
ATGACCATAACGCCAAAGCCTGATTCAGTTGTTTATCGTGTGCGTGTTGCCGTACCTGTGCATCTGTACGACACTTTTGA
CTATACACTCACCGAAGCACAATATGAACGGGCTCAAGTAGGCTCACGCGTCGCTATTTCATTTGGGCGACAAAACCTGA
TTGGTATCATCACTGAAAAAGTGAATCCACATGAGCCATTTACAGGCAACTTTCAGCTTAAAGCCATTTCTGAACTTTTA
GATGAACAGCCTATTTTAGATGAACAAGTTTTAAGTTTATTGACATGGTCCGCACAATATTACCAATTTCCAGTTGGCGA
GGTCATGCAAACCGCCCTTCCGGCCATACTACGTCAGGGCAAACCGATGGACGTTTTGTTCCATCTCTGGAAAATCACTC
CATGCGACAATGTTGAGGCACTGCTTAAACGTTCAGTGAAGCAACAAGATGCTTATCAGATTTTAAAGTTACATCCTGCT
GGAACAACAGAGAACATTCTCAATTTAAGTGGCGTAGAAACTGCCACACTTAAAGCGCTAGAAAAGAAAGGTTTGGTTGA
ATGTACGCTTGAACCACATGACTTTAGCCCTACACCTGTTCAATTGGCACAAATGCCGCTCACGCTAAATGAAGATCAAA
AGCAAGCAACCCAACAGGTTATTAAAGCACAGCATCAATACCAAGCATTTTTGTTAGATGGTTTAACAGGTAGCGGTAAA
ACCGAAGTTTATCTACACATCATGCACGAGGTGTTAAAACAGGGTAAACAAGTACTGGTTTTAGTGCCTGAAATTGGTTT
AACCCCTCAAACCATCTCGCGTTTTAAGTCTCGTTTTAATTGTGATATTGCTTTATTGCATTCTGGCTTAAACGACTCCA
AACGTTTACAAGCATGGCAACAAGCACAGACCGGAAAAGCATCTATTATTTTAGGGACACGCTCAGCGATCTATACACCG
CTGCCACGTTTGGGCTTAATCATTTTAGATGAAGAGCATGACCTGTCTTATAAACAGCAAGAAGGCTTCCGTTACCATGC
GCGTGATGTCGCACTATACCGAGGACACTTACAAAGCTGCCCTGTGATTTTAGGTTCGGCAACACCAAGTATTGATAGTT
ATTATTTGGTCGAAACTGGTAAGTTAACTTCACTGCAACTCAACAAACGTGCTGGACATGCACTTTTGCCTAAAATGCAT
TTGATTGATCTTAAAATTGTCAAAAAACAGCATGGAATTAGCCAGCCTCTTATTGAACAAATCAAACATACTTTAGCGAG
AAAAGAACAGGTTTTAATCTTTTTAAACCGTCGTGGTTATGCACCTGTACTGGTTTGTGAAAGCTGTGGATGGCAAGCCA
ATTGTCCACATTGTGATGCACATTTTACTTTGCATACCCAGCCTTATTCTTATTTACATTGCCACCACTGTGGAACCATT
CATCGCCTACCAGATCATTGCCCTGAATGTCAGCAAAAGAGCTTAAAAACACTAGGCGCAGGAACAGCTAAGGTCGAAGA
ACACTTACAAGAATTATTTCCAGAGCATGACGTGATTCGGGTTGATCGTGACAGTACCAGTCGTGTCGGAAGCTGGCAAA
AAATCTATGATCGCATTCATCAAAACAAACCAACAATTTTGCTCGGTACGCAAATGTTGGCAAAAGGTCACCATTTCCCA
CATGTGACTTTGGTTGCCATTTTAGATATTGATGCAGGGTTACTCAGCGTAGACATCCGTGCGCCAGAACGTACTGCGCA
ATTGATTGTTCAAGTGGCTGGCCGTGCAGGCCGTGGTGAGCATAAAGGCCATGTTTATTTGCAAACATTAAGGCCAGATC
ACCCACTCCTAACCACACTCATCGAAAAAGACTATCGTGCGGTTGCCAAACAAACATTGGCTGAACGTAAAGTTGCTTTG
CTACCGCCTTATCGCTATGCCGTACTCATACGTGCAGAGTCGAAAGATCGAGACTATACCTTGCATTTTTTAAATGAAGC
TGCTGAGCAACTTCGCCAAGTCGCTGGTGAGATTGTTGATATTTGGGGACCTATTCCAGCACCGATGGAACGTAAAGCTG
GGCGGTATCGTGCACACATGGTGATTTTATCTGCCGACCGCGCTCGTCTACATTTTTACTTAAGACAATGGTGGTCTCAA
TTGGTCCATGCACCAAGGCAGCATCAACTCAGGCTATCAATTGATGTCGATCCGCAAGAATTTAATTAG

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(643-738)

Type III restriction enzyme, res subunit (ResIII)

(208-370)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

95.822

100

0.958

Multiple sequence alignment