Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   BUM88_RS01245 Genome accession   NZ_CP020000
Coordinates   259720..260046 (+) Length   108 a.a.
NCBI ID   WP_003654486.1    Uniprot ID   A0AAW8QRU4
Organism   Acinetobacter calcoaceticus strain CA16     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 254720..265046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BUM88_RS01220 (BUM88_01220) hemC 255335..256252 (+) 918 WP_035362332.1 hydroxymethylbilane synthase -
  BUM88_RS01225 (BUM88_01225) - 256256..257023 (+) 768 WP_080026180.1 uroporphyrinogen-III synthase -
  BUM88_RS01230 (BUM88_01230) - 257032..257874 (+) 843 WP_080026181.1 hypothetical protein -
  BUM88_RS01235 (BUM88_01235) - 257884..259077 (+) 1194 WP_213033742.1 heme biosynthesis protein HemY -
  BUM88_RS01240 (BUM88_01240) - 259085..259525 (+) 441 WP_004640721.1 acyl-CoA thioesterase -
  BUM88_RS01245 (BUM88_01245) hns 259720..260046 (+) 327 WP_003654486.1 H-NS family nucleoid-associated regulatory protein Regulator
  BUM88_RS01250 (BUM88_01250) gspN 260380..261123 (+) 744 WP_005037277.1 type II secretion system protein N -
  BUM88_RS01255 (BUM88_01255) - 261123..261959 (+) 837 WP_003654490.1 type II secretion system protein N -
  BUM88_RS01260 (BUM88_01260) gspD 262001..264277 (+) 2277 WP_080026182.1 type II secretion system secretin GspD -
  BUM88_RS01265 (BUM88_01265) - 264319..264948 (+) 630 WP_056484323.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12506.17 Da        Isoelectric Point: 5.0524

>NTDB_id=219712 BUM88_RS01245 WP_003654486.1 259720..260046(+) (hns) [Acinetobacter calcoaceticus strain CA16]
MKPDISELSVEELKRLQEEAEALIVSKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNSE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=219712 BUM88_RS01245 WP_003654486.1 259720..260046(+) (hns) [Acinetobacter calcoaceticus strain CA16]
ATGAAGCCGGATATCAGTGAATTATCTGTTGAAGAGTTAAAACGTTTACAAGAAGAAGCTGAAGCTTTAATTGTAAGTAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTTAGTGTTGAACAACTTC
TTGAGTTTGGTGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTTGAACCGCGTTACCGTAACAAAAACAATTCTGAA
GAGACTTGGACTGGCCGTGGTAAACAACCACGCTGGTTAGTTGCTGAAATTGAAAAAGGCGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

98.148

100

0.981

Multiple sequence alignment