Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   YDC107_RS08465 Genome accession   NZ_CP025707
Coordinates   1701642..1702871 (+) Length   409 a.a.
NCBI ID   WP_020232947.1    Uniprot ID   -
Organism   Escherichia coli strain YDC107     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1696642..1707871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YDC107_RS08450 (YDC107_1635) - 1697157..1698833 (+) 1677 WP_001305965.1 polysaccharide biosynthesis/export family protein -
  YDC107_RS08455 (YDC107_1636) kdsB 1698843..1699583 (+) 741 WP_001554265.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  YDC107_RS08460 (YDC107_1637) - 1699580..1701607 (+) 2028 WP_023909088.1 capsular polysaccharide biosynthesis protein -
  YDC107_RS08465 (YDC107_1638) kpsS 1701642..1702871 (+) 1230 WP_020232947.1 capsular biosynthesis protein Regulator
  YDC107_RS28365 - 1703292..1703545 (+) 254 Protein_1630 IS30 family transposase -
  YDC107_RS08470 (YDC107_1639) - 1703733..1704479 (-) 747 WP_048266441.1 CatB-related O-acetyltransferase -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 48821.23 Da        Isoelectric Point: 9.9466

>NTDB_id=219688 YDC107_RS08465 WP_020232947.1 1701642..1702871(+) (kpsS) [Escherichia coli strain YDC107]
MQGNALTVLLSGKKYLLLQGPMGPFFNDVAEWLESLERNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPTPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVKTQVNAVYYGGNHNQHIDNV
NIDYIVFPY

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=219688 YDC107_RS08465 WP_020232947.1 1701642..1702871(+) (kpsS) [Escherichia coli strain YDC107]
ATGCAAGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCGATGGGACCTTTTTTCAA
TGACGTCGCCGAATGGTTAGAGTCATTAGAACGTAACGCTGTGAATGTTGTATTCAACGGTGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTGGCTTACTACCAAACGCCGAAAGAGTTTCCCGGATGGTTACGGGATCTCCATCGGCAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAACGCTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAGGAAGGATATTTACGCCCGCAATTTATTACCGTTGAAGAAGGCGGAGTGAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTACGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGTATAGGTCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGCCATGAGTTCCCTCGCTACCGCCACCATAA
ATCGTTTTCCCCCTGGTATGAAGCACGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTACCGAGGTTAATGAACGAGTTGGACCAGCGTTATTATCTTGCCGTTTTGCAGGTATATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCGCGTAAAGCGCCGAAAGA
AAGTTATTTGGTGATCAAACATCATCCGATGGATCGCGGTCACAGACTCTATCGACCATTAATTAAGCGGCTAAGTAAGG
AATATGGCTTAGGTGAGCGCGTCATTTATGTGCACGATCTCCCGATGCCGGAATTATTACGCCATGCAAAAGCGGTAGTG
ACGATTAACAGTACGGCGGGGATCTCTGCGCTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAAGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCTGACTTTAAACCGGATATGAAACTGTTTAAGAAGT
TTCGAGGGTATTTATTGGTGAAGACGCAGGTTAATGCGGTTTATTATGGGGGCAATCATAATCAGCACATAGATAATGTA
AATATCGATTATATAGTTTTTCCATATTAG

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.846

95.11

0.379