Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   YDC107_RS06330 Genome accession   NZ_CP025707
Coordinates   1288659..1289174 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain YDC107     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1283659..1294174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YDC107_RS06315 (YDC107_1230) emrR 1285211..1285741 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  YDC107_RS06320 (YDC107_1231) emrA 1285868..1287040 (+) 1173 WP_020233875.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  YDC107_RS06325 (YDC107_1232) emrB 1287057..1288595 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  YDC107_RS06330 (YDC107_1233) luxS 1288659..1289174 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  YDC107_RS06335 (YDC107_1234) gshA 1289324..1290880 (-) 1557 WP_001521120.1 glutamate--cysteine ligase -
  YDC107_RS06340 (YDC107_1235) yqaA 1290953..1291381 (-) 429 WP_001287454.1 YqaA family protein -
  YDC107_RS06345 (YDC107_1236) yqaB 1291378..1291944 (-) 567 WP_001521122.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  YDC107_RS06375 (YDC107_1242) csrA 1293236..1293421 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=219680 YDC107_RS06330 WP_001130211.1 1288659..1289174(-) (luxS) [Escherichia coli strain YDC107]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=219680 YDC107_RS06330 WP_001130211.1 1288659..1289174(-) (luxS) [Escherichia coli strain YDC107]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCACAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731