Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   BH100N_RS15010 Genome accession   NZ_CP025703
Coordinates   2931718..2932233 (-) Length   171 a.a.
NCBI ID   WP_001130208.1    Uniprot ID   Q8FEP8
Organism   Escherichia coli strain BH100N substr. MG2017     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2926718..2937233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BH100N_RS14985 (BH100N_02890) ygaZ 2927117..2927854 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  BH100N_RS14990 (BH100N_02891) ygaH 2927844..2928179 (+) 336 WP_000119749.1 L-valine transporter subunit YgaH -
  BH100N_RS14995 (BH100N_02892) emrR 2928270..2928800 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  BH100N_RS15000 (BH100N_02894) emrA 2928927..2930099 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  BH100N_RS15005 (BH100N_02895) emrB 2930116..2931654 (+) 1539 WP_001296316.1 multidrug efflux MFS transporter permease subunit EmrB -
  BH100N_RS15010 (BH100N_02896) luxS 2931718..2932233 (-) 516 WP_001130208.1 S-ribosylhomocysteine lyase Regulator
  BH100N_RS15015 (BH100N_02897) gshA 2932383..2933939 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  BH100N_RS15020 (BH100N_02898) yqaA 2934012..2934440 (-) 429 WP_001287454.1 YqaA family protein -
  BH100N_RS15025 (BH100N_02899) yqaB 2934437..2935003 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  BH100N_RS15060 (BH100N_02900) csrA 2936197..2936382 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19443.21 Da        Isoelectric Point: 5.0362

>NTDB_id=219615 BH100N_RS15010 WP_001130208.1 2931718..2932233(-) (luxS) [Escherichia coli strain BH100N substr. MG2017]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARNILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=219615 BH100N_RS15010 WP_001130208.1 2931718..2932233(-) (luxS) [Escherichia coli strain BH100N substr. MG2017]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAACATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8FEP8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737