Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   B2G73_RS09810 Genome accession   NZ_CP019986
Coordinates   1938168..1938782 (-) Length   204 a.a.
NCBI ID   WP_079224781.1    Uniprot ID   -
Organism   Citrobacter werkmanii strain BF-6     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1933168..1943782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B2G73_RS09795 helD 1933392..1935446 (-) 2055 WP_079224779.1 DNA helicase IV -
  B2G73_RS09800 - 1935572..1936018 (+) 447 WP_038639436.1 YccF domain-containing protein -
  B2G73_RS09805 yccS 1936037..1938199 (+) 2163 WP_042314206.1 YccS family putative transporter -
  B2G73_RS09810 sxy/tfoX 1938168..1938782 (-) 615 WP_079224781.1 TfoX/Sxy family DNA transformation protein Regulator
  B2G73_RS09815 sulA 1938999..1939508 (+) 510 WP_042314183.1 SOS-induced cell division inhibitor SulA -
  B2G73_RS09820 ompA 1939866..1940924 (+) 1059 WP_042314186.1 porin OmpA -
  B2G73_RS09825 matP 1941023..1941475 (-) 453 WP_042314187.1 macrodomain Ter protein MatP -
  B2G73_RS09830 - 1941661..1943421 (+) 1761 WP_079224784.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23160.72 Da        Isoelectric Point: 9.3864

>NTDB_id=219597 B2G73_RS09810 WP_079224781.1 1938168..1938782(-) (sxy/tfoX) [Citrobacter werkmanii strain BF-6]
MKELSYAKIYKSQEYLASLGTIHYRSLFGSYSLTVGDTVFAMVASGELYLRACEQSVQYCVKNPPVWLTFIKRGRPVVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTLRTLGAQMCWLKLRQNN
PALTVKILYALEGAVGGVHEAALPAVRRQELVEWVSSLTPKPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=219597 B2G73_RS09810 WP_079224781.1 1938168..1938782(-) (sxy/tfoX) [Citrobacter werkmanii strain BF-6]
ATGAAAGAACTTTCTTATGCAAAGATCTATAAATCACAAGAATATCTGGCATCTCTGGGAACCATTCATTATCGCTCACT
GTTTGGCAGCTACAGTTTGACGGTTGGGGATACGGTCTTTGCGATGGTCGCCAGCGGTGAGTTATATCTTCGGGCCTGCG
AGCAGAGCGTACAGTACTGTGTAAAAAATCCGCCTGTCTGGCTGACATTTATAAAGCGCGGGCGTCCGGTGGTACTCAAC
TACTATCAGGTGAATGATGCACTGTGGCAAAACCAGCAGCAGTTAGTGTCGTTATCGCGGTACTCATTGGATGCTGCTGT
TAAGGAAAAACAGAGTCGCTTTGCTCAACATCGTCTGCGGGAACTACCAAATATGACGTTTCATCTGGAGACCCTGCTAA
ATGAAGCAGGAATTAAAGATGAGGGAACATTGCGAACGTTGGGCGCCCAAATGTGCTGGCTGAAACTGCGGCAAAATAAT
CCAGCCCTGACGGTAAAAATACTTTATGCCCTTGAAGGCGCGGTCGGTGGCGTGCATGAAGCAGCGCTCCCGGCGGTCCG
TCGCCAGGAGCTGGTGGAGTGGGTCAGTTCCCTGACGCCGAAGCCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

69.608

100

0.696

Multiple sequence alignment