Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   BC8716_RS13480 Genome accession   NZ_CP019985
Coordinates   2808349..2809302 (+) Length   317 a.a.
NCBI ID   WP_062749836.1    Uniprot ID   A0A268S1B2
Organism   Shouchella clausii strain DSM 8716     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2810242..2820793 2808349..2809302 flank 940


Gene organization within MGE regions


Location: 2808349..2820793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BC8716_RS13480 (BC8716_13470) ceuB 2808349..2809302 (+) 954 WP_062749836.1 ABC transporter permease Machinery gene
  BC8716_RS13485 (BC8716_13475) - 2809292..2810245 (+) 954 WP_157730442.1 iron chelate uptake ABC transporter family permease subunit -
  BC8716_RS13490 (BC8716_13480) - 2810242..2811063 (+) 822 WP_216924644.1 ABC transporter ATP-binding protein -
  BC8716_RS13495 (BC8716_13485) - 2811180..2812151 (+) 972 WP_094426449.1 siderophore ABC transporter substrate-binding protein -
  BC8716_RS13500 (BC8716_13490) - 2812327..2812935 (+) 609 WP_157730443.1 restriction endonuclease -
  BC8716_RS13505 (BC8716_13495) - 2812972..2813601 (-) 630 WP_011247732.1 deoxynucleoside kinase -
  BC8716_RS13510 (BC8716_13500) - 2813613..2814236 (-) 624 WP_094426453.1 deoxynucleoside kinase -
  BC8716_RS13515 (BC8716_13505) - 2814393..2815568 (+) 1176 WP_094426455.1 MalY/PatB family protein -
  BC8716_RS22320 - 2815655..2815807 (+) 153 WP_157730444.1 hypothetical protein -
  BC8716_RS13520 (BC8716_13510) - 2815847..2816338 (+) 492 WP_011247728.1 YwpF-like family protein -
  BC8716_RS13525 (BC8716_13515) - 2816458..2817678 (+) 1221 WP_094426457.1 MFS transporter -
  BC8716_RS13530 (BC8716_13520) ytkD 2817744..2818226 (+) 483 WP_094426459.1 RNA deprotection pyrophosphohydrolase -
  BC8716_RS13535 (BC8716_13525) - 2818252..2819019 (-) 768 WP_094429259.1 ABC transporter permease -
  BC8716_RS13540 (BC8716_13530) - 2819036..2819794 (-) 759 WP_094426461.1 ABC transporter ATP-binding protein -
  BC8716_RS13545 (BC8716_13535) - 2819807..2820793 (-) 987 WP_094426462.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35017.21 Da        Isoelectric Point: 10.1418

>NTDB_id=219570 BC8716_RS13480 WP_062749836.1 2808349..2809302(+) (ceuB) [Shouchella clausii strain DSM 8716]
MKIRYLLPLLLILSFASLFIGVQDISPLDLFRLDDEDVQTLVISRIPRLLSVLIVGVSLSVCGLIMQQLTQNKFVSPTTA
GTMDWARLGILVAVVVFTQASTLQRMFIAFLFALFGTFLFMKILERIRFKNVVFVPLVGLMLGSVVNSITTFLAYRYDLV
QSLSSWMQGSFSLVLKGRYEILYIGIPLVVIAFLFANRFTVAGMGKDFSTNLGLNYNQIMNIGLFIVAMITATIVVTIGS
IPFLGLVIPNIVSIIRGDNLKNSLPHTALLGAIFLLACDILGRVLIYPYEIPIGLVVGVVGSAIFLYLLLRRRSHAA

Nucleotide


Download         Length: 954 bp        

>NTDB_id=219570 BC8716_RS13480 WP_062749836.1 2808349..2809302(+) (ceuB) [Shouchella clausii strain DSM 8716]
ATGAAAATAAGATATTTACTCCCTTTGCTTTTGATTTTATCGTTTGCATCTTTATTTATTGGCGTACAGGATATATCGCC
ACTTGATTTGTTTCGTCTAGACGATGAAGACGTGCAAACACTCGTCATTAGCCGTATCCCTCGTCTATTAAGTGTGTTGA
TTGTCGGTGTTAGTTTAAGCGTTTGCGGTTTAATTATGCAGCAGCTTACACAAAACAAATTTGTTTCGCCGACAACAGCT
GGAACTATGGATTGGGCTCGGCTTGGCATTCTTGTCGCCGTGGTTGTCTTTACACAAGCAAGCACGCTGCAAAGGATGTT
TATTGCCTTTCTTTTTGCGTTGTTTGGAACGTTTCTTTTTATGAAAATACTGGAGCGCATCCGCTTTAAAAACGTTGTGT
TTGTCCCGCTTGTCGGGCTTATGTTAGGTAGTGTGGTCAACTCAATCACCACTTTTCTAGCTTACCGATATGATTTAGTG
CAAAGCTTGTCTTCTTGGATGCAAGGGAGCTTTTCACTCGTTCTTAAAGGGCGCTATGAAATTTTATACATAGGCATTCC
CCTTGTTGTCATTGCCTTTTTATTCGCAAATCGCTTTACGGTGGCAGGAATGGGGAAGGATTTTTCGACAAACTTGGGCT
TAAATTATAACCAAATTATGAATATCGGCCTTTTCATTGTCGCGATGATCACGGCTACGATTGTCGTCACAATTGGTTCG
ATTCCTTTTTTAGGGCTAGTCATTCCAAACATCGTTTCGATTATAAGAGGGGACAACTTAAAAAACAGTTTGCCTCATAC
AGCGCTATTAGGCGCCATTTTCTTGCTCGCTTGTGATATTTTAGGGCGTGTTCTCATTTATCCATATGAAATTCCGATTG
GACTGGTCGTTGGGGTTGTCGGGAGCGCGATCTTTTTGTACTTGCTCTTAAGGAGACGATCTCATGCAGCCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A268S1B2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

49.367

99.685

0.492

Multiple sequence alignment