Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   PI20285_RS05530 Genome accession   NZ_CP019981
Coordinates   1099728..1101530 (-) Length   600 a.a.
NCBI ID   WP_057773016.1    Uniprot ID   -
Organism   Pediococcus inopinatus strain DSM 20285     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1094728..1106530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PI20285_RS05505 (PI20285_05485) mgtE 1095031..1096383 (-) 1353 WP_057773027.1 magnesium transporter -
  PI20285_RS05510 (PI20285_05490) - 1096402..1097307 (-) 906 WP_057773025.1 RluA family pseudouridine synthase -
  PI20285_RS05515 (PI20285_05495) - 1097297..1098103 (-) 807 WP_057773022.1 NAD kinase -
  PI20285_RS05520 (PI20285_05500) - 1098110..1098760 (-) 651 WP_057773020.1 GTP pyrophosphokinase family protein -
  PI20285_RS05525 (PI20285_05505) - 1099034..1099648 (+) 615 WP_057773018.1 DsbA family protein -
  PI20285_RS05530 (PI20285_05510) pepF 1099728..1101530 (-) 1803 WP_057773016.1 oligoendopeptidase F Regulator
  PI20285_RS05535 (PI20285_05515) - 1101573..1102685 (-) 1113 WP_057773014.1 competence protein CoiA family protein -
  PI20285_RS05540 (PI20285_05520) - 1102784..1103497 (-) 714 WP_057773012.1 adaptor protein MecA -
  PI20285_RS05545 (PI20285_05525) spxA 1103623..1104021 (-) 399 WP_057773010.1 transcriptional regulator SpxA -
  PI20285_RS05550 (PI20285_05530) - 1104250..1104507 (+) 258 WP_063698079.1 transposase -
  PI20285_RS05555 (PI20285_05535) - 1104492..1105376 (+) 885 WP_105782154.1 IS3 family transposase -
  PI20285_RS05560 (PI20285_05540) - 1105589..1106329 (-) 741 WP_057775608.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 68680.30 Da        Isoelectric Point: 5.4934

>NTDB_id=219534 PI20285_RS05530 WP_057773016.1 1099728..1101530(-) (pepF) [Pediococcus inopinatus strain DSM 20285]
MSEIKQLPKRSEVPIELTWDLSTIFKNKEAVNKAIAELHPRVNELVKLAGGLDKDSNSLLTAIRSELEIESQLERIYVYA
ELKNDQDTSNNQNQALKDQVTSLVAKVSAKLAWFEPEILAIPKATLEKYQENNTELKPYQHYFEVLNLKKNHVLTTKEEA
ILAGAGSVFEVSSNVFGILDNSDLKFPFVKDEAGEAVQLSQGVYSTLLQSTEQSVRKEAFEQLYAVYEQFKNTFAMTLAG
EVKVHNFKAQIRGYKDARQAAMSANAIPESVYSNLITEVHDHLDLLHRYVGLRKKILNLKELHMYDLYTPITGKSPLSYT
YQEAQKEAKAALQIMGSDYVGHVEDAFKNRWIDVVENEGKRSGAYSSGVYGTNPFMLLNWHNDLDNLFTLVHEMGHSMHS
YYTTHNQPYQYGDYPIFVAEIASTTNENILTQYLLDKYDDPQIKLFVLNHYLDGFKGTVYRQTQFAEFEQFIHETDARGE
ALTAEMMSDYYGKLNHRYYGNDVINDSQIKSEWTRIPHFYYNFYVYQYATGFAAASTLANGISSKEPHARENYLNYLKSG
SSDFPLNVMKKAGVNMAEKQYLEDAFAVFEKRLNEFEALL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=219534 PI20285_RS05530 WP_057773016.1 1099728..1101530(-) (pepF) [Pediococcus inopinatus strain DSM 20285]
ATGTCGGAAATTAAGCAATTACCAAAACGTAGTGAAGTACCAATTGAATTAACTTGGGATCTTTCAACAATTTTTAAAAA
TAAAGAGGCTGTTAATAAGGCTATCGCCGAGTTACATCCACGGGTAAATGAGCTAGTGAAGCTTGCTGGTGGTCTGGACA
AGGACAGCAATAGTTTGCTAACAGCTATTCGAAGCGAGCTTGAAATTGAAAGCCAACTGGAACGTATTTATGTTTATGCA
GAACTAAAAAATGATCAAGATACTTCAAATAATCAAAATCAAGCACTAAAAGATCAAGTCACTAGTTTAGTGGCCAAGGT
GTCTGCAAAATTAGCTTGGTTTGAACCAGAAATTTTAGCAATCCCTAAAGCTACTCTGGAAAAATATCAAGAAAATAATA
CAGAACTAAAACCTTATCAGCATTACTTTGAAGTACTTAACTTAAAGAAAAATCATGTTCTTACAACAAAAGAAGAAGCC
ATTTTGGCTGGTGCAGGATCCGTTTTTGAAGTTTCTTCTAATGTTTTTGGAATCTTAGATAATTCTGATCTCAAGTTTCC
GTTCGTAAAAGATGAGGCCGGAGAAGCGGTCCAATTGTCTCAAGGCGTGTATTCAACCCTGCTGCAGTCAACTGAGCAGT
CTGTTCGTAAAGAAGCCTTTGAACAGCTTTACGCAGTGTATGAGCAGTTTAAAAATACGTTTGCCATGACACTTGCCGGA
GAAGTCAAGGTTCATAATTTCAAAGCACAAATTAGAGGGTATAAAGATGCCCGTCAGGCTGCTATGAGTGCAAATGCAAT
TCCAGAATCGGTTTATTCTAATTTGATAACTGAGGTGCATGATCATTTGGATTTACTTCATAGGTATGTCGGTTTACGGA
AGAAGATTCTTAATTTAAAAGAATTACATATGTATGATTTATACACACCGATTACAGGAAAATCGCCTTTAAGCTACACG
TATCAGGAAGCACAAAAAGAAGCTAAAGCAGCCCTTCAAATTATGGGTAGTGATTATGTGGGCCACGTGGAGGACGCGTT
TAAGAACCGGTGGATTGATGTTGTTGAAAATGAAGGTAAAAGAAGTGGTGCTTATTCTTCAGGTGTGTATGGGACCAATC
CGTTCATGCTACTTAACTGGCACAATGATTTGGACAATTTATTTACATTGGTCCATGAGATGGGACACAGTATGCACAGC
TACTACACAACCCATAATCAACCTTATCAATATGGTGATTATCCGATTTTTGTTGCTGAAATTGCGTCGACAACTAATGA
AAATATTTTGACACAGTATCTTTTAGATAAGTATGATGATCCACAAATTAAGTTGTTCGTGCTGAACCATTATCTAGATG
GATTTAAAGGGACAGTTTATCGACAAACACAATTTGCCGAATTTGAACAATTTATTCATGAGACAGATGCCCGCGGAGAA
GCCCTAACTGCAGAAATGATGTCGGATTATTACGGTAAATTAAATCATCGTTATTATGGGAATGATGTGATAAATGATTC
ACAAATTAAATCAGAATGGACTCGGATCCCGCACTTTTACTATAATTTTTATGTTTATCAATATGCAACTGGTTTTGCGG
CTGCATCAACTTTGGCTAACGGTATTTCATCAAAAGAACCACATGCAAGGGAAAACTATTTAAACTATTTGAAGTCAGGT
AGTTCTGATTTTCCTTTGAATGTGATGAAAAAAGCCGGGGTTAATATGGCTGAAAAACAATATTTAGAAGACGCGTTTGC
TGTGTTTGAAAAGCGCTTGAATGAATTCGAAGCCTTACTATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.178

99

0.507

Multiple sequence alignment