Detailed information NTG0219518

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: C0634_RS07335
• Genome accession: NZ_CP025627
• Coordinates: 1123968..1124960 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain SCEC020007
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1118968..1129960

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C0634_RS07305 (C0634_07325)	ispD	1119029..1119739 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
C0634_RS07310 (C0634_07330)	ispF	1119739..1120218 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
C0634_RS07315 (C0634_07335)	truD	1120215..1121264 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
C0634_RS07320 (C0634_07340)	surE	1121245..1122006 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
C0634_RS07325 (C0634_07345)	pcm	1122000..1122626 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
C0634_RS07330 (C0634_07350)	nlpD	1122811..1123905 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
C0634_RS07335 (C0634_07355)	rpoS	1123968..1124960 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
C0634_RS07340 (C0634_07360)	ygbN	1125054..1126418 (-)	1365	WP_000104441.1	GntP family transporter	-
C0634_RS07345 (C0634_07365)	ygbM	1126507..1127283 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
C0634_RS07350 (C0634_07370)	ygbL	1127288..1127926 (-)	639	WP_001278994.1	aldolase	-
C0634_RS07355 (C0634_07375)	otnK	1127923..1129185 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=219518 C0634_RS07335 WP_000081550.1 1123968..1124960(+) (rpoS) [Escherichia coli strain SCEC020007]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=219518 C0634_RS07335 WP_000081550.1 1123968..1124960(+) (rpoS) [Escherichia coli strain SCEC020007]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715