Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LS41612_RS09165 Genome accession   NZ_CP019980
Coordinates   1824329..1826020 (+) Length   563 a.a.
NCBI ID   WP_024361171.1    Uniprot ID   A0A2S0JZB3
Organism   Lysinibacillus sphaericus strain DSM 28     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1819329..1831020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LS41612_RS09140 (LS41612_09120) xseB 1819656..1819889 (+) 234 WP_024361176.1 exodeoxyribonuclease VII small subunit -
  LS41612_RS09145 (LS41612_09125) - 1819895..1820776 (+) 882 WP_024361175.1 polyprenyl synthetase family protein -
  LS41612_RS09150 (LS41612_09130) dxs 1820940..1822841 (+) 1902 WP_024361174.1 1-deoxy-D-xylulose-5-phosphate synthase -
  LS41612_RS09155 (LS41612_09135) - 1822841..1823659 (+) 819 WP_024361173.1 TlyA family RNA methyltransferase -
  LS41612_RS09160 (LS41612_09140) ahrC 1823761..1824210 (+) 450 WP_024361172.1 transcriptional regulator AhrC/ArgR -
  LS41612_RS09165 (LS41612_09145) recN 1824329..1826020 (+) 1692 WP_024361171.1 DNA repair protein RecN Machinery gene
  LS41612_RS09170 (LS41612_09150) - 1826148..1827095 (+) 948 WP_024361170.1 SpoIVB peptidase S55 domain-containing protein -
  LS41612_RS09175 (LS41612_09155) spo0A 1827451..1828242 (+) 792 WP_024361169.1 sporulation transcription factor Spo0A -
  LS41612_RS09180 (LS41612_09160) - 1828570..1829694 (+) 1125 WP_024361168.1 ABC transporter ATP-binding protein -
  LS41612_RS09185 (LS41612_09165) - 1829736..1830629 (+) 894 WP_029747084.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63353.14 Da        Isoelectric Point: 4.6686

>NTDB_id=219500 LS41612_RS09165 WP_024361171.1 1824329..1826020(+) (recN) [Lysinibacillus sphaericus strain DSM 28]
MLRELSIRNFAIIEDLTVSFSDGLTVLTGETGAGKSIIIDAVHLLAGGRGNSEFIRHGAKKAELGGLFQISSTAHPVYKK
LEEAGIEIEEDSIILRRDLNDSGKSVCRVNGKLVPLSVLRDIGASLIDIHGQHENQELMDEKQHIHLLDQFAEEQLSPIL
EQYSIQYNEYRALKKELATISIDEQLMAQRIDLYQFQMKELEDANLKLGEEDELLDERRRLMNFNKIFERSSAAYEAIQG
ETKGLDWIGTAMGALDDAAVIDEQFKEASESVTTAFYALQDAAYQVKNVLDELEFDPARLNEVEQRLALFQNLKRKYGST
VEEMLAYYEKIKTELSELLNRDEILQLKERKVLEMEVVLSEFAEKLSHVRKAAANDLSEAIMAELRELHMEKAKFIVNFD
ALPYFDVNGKDQVIFYISTNVGEPPKSLPKIASGGELSRMMLALKTIFSSSNGVTSIIFDEVDTGVSGRVAQAIAEKIAA
ISVNSQVLCISHLPQVAAMADHHYFIKKEVEHDRTFTSLAEIDTDARIEEVSRMMSGAEITDLTLQHATELLKMANERKK
QMR

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=219500 LS41612_RS09165 WP_024361171.1 1824329..1826020(+) (recN) [Lysinibacillus sphaericus strain DSM 28]
GTGTTAAGAGAGCTTAGTATTCGAAATTTTGCCATCATCGAGGATTTAACGGTTAGTTTTTCGGATGGTTTAACTGTACT
AACAGGAGAAACTGGTGCTGGGAAATCCATTATTATTGATGCGGTACATTTACTTGCTGGTGGTAGAGGCAATTCAGAAT
TTATTCGTCATGGTGCTAAAAAAGCAGAGTTAGGCGGGTTGTTTCAAATTTCAAGCACTGCACATCCTGTATACAAGAAA
TTGGAGGAAGCAGGCATTGAAATAGAAGAAGATTCTATTATTTTACGCCGCGATTTAAATGACTCTGGTAAAAGTGTTTG
TCGGGTAAATGGCAAATTGGTCCCTTTATCGGTTTTACGAGATATTGGTGCAAGTTTAATTGATATACATGGCCAACATG
AAAATCAAGAACTAATGGATGAAAAACAACATATTCATTTATTGGATCAATTTGCAGAAGAGCAACTATCACCGATTCTT
GAACAATATAGTATTCAATATAACGAATATCGGGCATTAAAAAAAGAATTAGCCACCATTTCTATTGATGAGCAGTTAAT
GGCGCAACGCATTGATTTGTACCAATTCCAAATGAAAGAATTGGAAGATGCAAATTTAAAGCTTGGTGAAGAAGATGAGC
TGTTAGATGAACGTCGTCGTCTAATGAACTTTAATAAAATTTTCGAACGCTCGAGTGCTGCCTATGAAGCAATTCAGGGA
GAGACAAAAGGGCTTGACTGGATCGGTACAGCGATGGGCGCATTAGATGATGCGGCGGTCATCGATGAACAGTTTAAAGA
GGCATCTGAGTCGGTAACAACTGCTTTTTACGCTTTACAGGATGCCGCCTATCAGGTAAAAAATGTATTAGACGAGTTAG
AATTTGATCCTGCGCGATTAAATGAAGTGGAGCAACGCTTGGCACTTTTCCAAAACTTAAAGCGCAAATACGGCTCCACT
GTTGAAGAAATGCTCGCCTATTATGAGAAGATTAAAACAGAGCTTAGTGAGCTTTTGAATCGTGATGAAATATTGCAATT
AAAAGAACGAAAAGTACTTGAAATGGAAGTAGTATTAAGTGAATTTGCTGAAAAACTTTCGCATGTTCGAAAAGCAGCAG
CCAATGATTTAAGCGAGGCTATTATGGCAGAGCTACGTGAATTACATATGGAAAAAGCAAAATTTATTGTAAATTTTGAT
GCTTTACCTTACTTTGATGTCAATGGTAAAGACCAAGTGATCTTTTATATTTCAACGAATGTCGGGGAACCACCGAAATC
TTTACCGAAAATTGCTTCAGGTGGGGAATTGTCGCGTATGATGTTAGCATTAAAAACGATTTTTTCTTCTTCCAATGGTG
TAACATCCATTATTTTTGACGAAGTGGATACTGGCGTAAGCGGTCGCGTAGCGCAAGCAATCGCTGAAAAAATTGCAGCT
ATTTCTGTTAATTCTCAAGTTTTGTGTATTTCGCATTTACCTCAAGTGGCGGCGATGGCTGACCATCATTACTTCATTAA
AAAAGAGGTTGAACATGATCGGACATTTACTTCTTTAGCAGAAATCGATACAGATGCTCGTATTGAAGAAGTGAGCAGAA
TGATGTCAGGTGCAGAAATTACCGATTTAACTTTACAGCATGCGACAGAATTGTTAAAGATGGCAAACGAACGAAAAAAA
CAAATGCGCTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S0JZB3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.778

100

0.54

Multiple sequence alignment