Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   LS41612_RS02275 Genome accession   NZ_CP019980
Coordinates   456118..457068 (+) Length   316 a.a.
NCBI ID   WP_024361370.1    Uniprot ID   A0A2S0JVN5
Organism   Lysinibacillus sphaericus strain DSM 28     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 451118..462068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LS41612_RS02255 (LS41612_02250) - 451610..452737 (+) 1128 WP_024361374.1 M20 peptidase aminoacylase family protein -
  LS41612_RS02260 (LS41612_02255) - 452753..453577 (+) 825 WP_024361373.1 GNAT family N-acetyltransferase -
  LS41612_RS02265 (LS41612_02260) menC 453600..454709 (+) 1110 WP_024361372.1 o-succinylbenzoate synthase -
  LS41612_RS02270 (LS41612_02265) - 454774..455829 (+) 1056 WP_024361371.1 membrane protein -
  LS41612_RS02275 (LS41612_02270) ceuB 456118..457068 (+) 951 WP_024361370.1 ABC transporter permease Machinery gene
  LS41612_RS02280 (LS41612_02275) - 457061..458014 (+) 954 WP_024361369.1 iron chelate uptake ABC transporter family permease subunit -
  LS41612_RS02285 (LS41612_02280) - 458011..458772 (+) 762 WP_024361368.1 ABC transporter ATP-binding protein -
  LS41612_RS02290 (LS41612_02285) - 458832..459839 (+) 1008 WP_024361367.1 siderophore ABC transporter substrate-binding protein -
  LS41612_RS02295 (LS41612_02290) - 459841..460155 (+) 315 WP_024361366.1 antibiotic biosynthesis monooxygenase -
  LS41612_RS02300 (LS41612_02295) - 460311..460955 (-) 645 WP_029747106.1 hypothetical protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34739.00 Da        Isoelectric Point: 10.1796

>NTDB_id=219490 LS41612_RS02275 WP_024361370.1 456118..457068(+) (ceuB) [Lysinibacillus sphaericus strain DSM 28]
MKIRYLLTATVVLSIVSLFIGVVNIKPSDLLDFGSEETRLFIISRVPRLVAILLAGAGMSIAGLIMQSLSRNKFVSPTTA
GTLDATKLGVLISMMFFTNVTYFQKISFAFIFALAGTLLFMQILNRIKFKDAIFIPLIGLMFGNILSSITTFFAYKADII
QNITAWLQGDFSLIMKGRYELLYISVPVLILAYIYANRFTVAGMGEDFAKNLGLSYKFVVNLGLVLVALVTTTVVLTVGM
IPFLGLIIPNIISLFKGDNLAKTLPHTALLGMSFLLLCDILGRVLIFPYEIPISMTVGVIGSAIFLFMLFRGRAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=219490 LS41612_RS02275 WP_024361370.1 456118..457068(+) (ceuB) [Lysinibacillus sphaericus strain DSM 28]
ATGAAAATAAGATATCTTTTAACAGCAACTGTTGTGTTGTCTATTGTGTCGCTATTTATTGGTGTAGTAAATATTAAACC
AAGTGACTTATTAGACTTCGGTTCAGAAGAAACTAGACTATTTATTATTAGTCGTGTACCAAGACTTGTAGCAATTTTGC
TAGCAGGTGCAGGTATGAGTATTGCTGGTTTAATTATGCAAAGCTTAAGTAGGAATAAGTTCGTGTCACCAACTACAGCA
GGAACTTTAGATGCTACGAAATTAGGTGTCCTAATTTCAATGATGTTTTTTACAAATGTCACGTACTTCCAAAAAATTTC
CTTCGCTTTCATATTTGCTTTAGCCGGCACATTATTGTTTATGCAAATATTAAATCGAATAAAGTTTAAAGATGCGATTT
TTATACCGCTTATTGGCTTAATGTTCGGAAATATTCTTTCGTCGATTACGACATTCTTTGCGTATAAGGCAGATATAATT
CAAAACATTACTGCATGGTTACAAGGAGATTTCTCTTTAATAATGAAAGGTCGTTATGAGCTTTTATACATAAGTGTACC
TGTTCTAATTTTAGCTTACATTTATGCGAATCGTTTCACAGTGGCTGGAATGGGTGAAGATTTTGCAAAAAATCTTGGTC
TTTCCTATAAATTCGTTGTGAATTTAGGTCTAGTGTTAGTAGCACTCGTAACAACTACGGTGGTATTAACTGTTGGTATG
ATTCCTTTCCTTGGATTAATTATTCCAAATATCATATCGCTATTCAAAGGGGATAACCTTGCAAAGACATTACCACATAC
AGCATTACTCGGAATGTCATTCCTATTATTATGTGATATTTTAGGACGCGTCTTGATTTTCCCTTACGAAATTCCGATTA
GTATGACGGTCGGCGTCATCGGAAGTGCCATCTTCCTATTTATGTTGTTTAGGGGGAGAGCATATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S0JVN5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.165

100

0.532

Multiple sequence alignment