Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CY655_RS16640 Genome accession   NZ_CP025573
Coordinates   3335856..3336371 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain E-1246     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3330856..3341371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CY655_RS16615 (CY655_17295) ygaZ 3331255..3331992 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  CY655_RS16620 (CY655_17300) ygaH 3331982..3332317 (+) 336 WP_000119745.1 L-valine transporter subunit YgaH -
  CY655_RS16625 (CY655_17305) emrR 3332408..3332938 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  CY655_RS16630 (CY655_17310) emrA 3333065..3334237 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  CY655_RS16635 (CY655_17315) emrB 3334254..3335792 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  CY655_RS16640 (CY655_17320) luxS 3335856..3336371 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  CY655_RS16645 (CY655_17325) gshA 3336521..3338077 (-) 1557 WP_001551535.1 glutamate--cysteine ligase -
  CY655_RS16650 (CY655_17330) yqaA 3338150..3338578 (-) 429 WP_001287454.1 YqaA family protein -
  CY655_RS16655 (CY655_17335) yqaB 3338575..3339141 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  CY655_RS16685 (CY655_17365) csrA 3340371..3340556 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=219447 CY655_RS16640 WP_001130211.1 3335856..3336371(-) (luxS) [Escherichia coli strain E-1246]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=219447 CY655_RS16640 WP_001130211.1 3335856..3336371(-) (luxS) [Escherichia coli strain E-1246]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731