Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CY655_RS12910 Genome accession   NZ_CP025573
Coordinates   2542485..2542961 (+) Length   158 a.a.
NCBI ID   WP_001186726.1    Uniprot ID   -
Organism   Escherichia coli strain E-1246     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2537485..2547961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CY655_RS12885 (CY655_13420) istB 2538390..2539136 (-) 747 WP_001016257.1 IS21-like element ISEc12 family helper ATPase IstB -
  CY655_RS12890 (CY655_13425) istA 2539151..2540692 (-) 1542 WP_001298859.1 IS21-like element ISEc12 family transposase -
  CY655_RS12895 (CY655_13430) - 2540888..2541574 (+) 687 Protein_2480 AIDA repeat-containing protein -
  CY655_RS12900 (CY655_13435) - 2541561..2541908 (+) 348 Protein_2481 DUF932 domain-containing protein -
  CY655_RS12905 (CY655_13440) - 2541990..2542469 (+) 480 WP_000860074.1 antirestriction protein -
  CY655_RS12910 (CY655_13445) radC 2542485..2542961 (+) 477 WP_001186726.1 RadC family protein Machinery gene
  CY655_RS12915 (CY655_13450) yeeT 2543024..2543245 (+) 222 WP_000692300.1 DUF987 domain-containing protein -
  CY655_RS12920 (CY655_13455) cbeA 2543319..2543687 (+) 369 WP_001285585.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  CY655_RS12925 (CY655_13460) cbtA 2543776..2544150 (+) 375 WP_000854814.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  CY655_RS12930 (CY655_13465) yeeW 2544147..2544341 (+) 195 WP_000988600.1 DUF5983 family protein -
  CY655_RS12935 - 2544387..2544467 (+) 81 Protein_2488 hypothetical protein -
  CY655_RS12940 (CY655_13470) - 2544756..2544902 (-) 147 Protein_2489 transposase domain-containing protein -
  CY655_RS12945 (CY655_13475) - 2544956..2545138 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  CY655_RS12950 (CY655_13480) tmaR 2545239..2545568 (-) 330 WP_000450409.1 DUF496 family protein -
  CY655_RS12955 (CY655_13485) yeeA 2545740..2546798 (-) 1059 WP_001200884.1 FUSC family protein -
  CY655_RS12960 (CY655_13490) sbmC 2546996..2547469 (-) 474 WP_001105389.1 DNA gyrase inhibitor SbmC -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17673.32 Da        Isoelectric Point: 7.2020

>NTDB_id=219436 CY655_RS12910 WP_001186726.1 2542485..2542961(+) (radC) [Escherichia coli strain E-1246]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=219436 CY655_RS12910 WP_001186726.1 2542485..2542961(+) (radC) [Escherichia coli strain E-1246]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACTCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAACTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment