Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppD   Type   Regulator
Locus tag   B1H24_RS01060 Genome accession   NZ_CP019978
Coordinates   172676..173722 (+) Length   348 a.a.
NCBI ID   WP_079219396.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain Sag37     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 167676..178722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B1H24_RS01045 (B1H24_01045) - 168934..170589 (+) 1656 WP_001118749.1 peptide ABC transporter substrate-binding protein -
  B1H24_RS01050 (B1H24_01050) - 170708..171622 (+) 915 WP_000598965.1 ABC transporter permease -
  B1H24_RS01055 (B1H24_01055) - 171632..172663 (+) 1032 WP_000764052.1 ABC transporter permease -
  B1H24_RS01060 (B1H24_01060) oppD 172676..173722 (+) 1047 WP_079219396.1 ABC transporter ATP-binding protein Regulator
  B1H24_RS01065 (B1H24_01065) amiF 173722..174654 (+) 933 WP_000138506.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 38730.15 Da        Isoelectric Point: 4.7051

>NTDB_id=219387 B1H24_RS01060 WP_079219396.1 172676..173722(+) (oppD) [Streptococcus agalactiae strain Sag37]
MEKETILSVNNLHVDFHTYAGEVKAIRDVNFELKKGETLAIVGESGSGKSVTTRTLIGLNAKNSEISGNVQFKGRNLVEL
SEEEWTKVRGNEISMIFQDPMTSLDPTMKIGMQIAEPMMIHQKISKKDALKLALELMKDVGIPNAEEHINDYPHQWSGGM
RQRAVIAIALAADPEILIADEPTTALDVTIQAQILNLMKKIQAERDSSIVFITHDLGVVAGMADRVAVMYAGKIVEFGTV
DEVFYNPQHPYTWGLLNSMPTTDTESGSLESIPGTPPDLLNPPKGDAFAARNEFALDIDHEEEPPYFKVSETHFAATWLL
DERSPKVLPPLPIQNRWEKWNEIEGRKA

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=219387 B1H24_RS01060 WP_079219396.1 172676..173722(+) (oppD) [Streptococcus agalactiae strain Sag37]
ATGGAAAAAGAAACTATTTTAAGTGTTAATAATCTTCATGTTGACTTCCACACATATGCTGGAGAAGTAAAAGCAATTCG
TGATGTCAACTTTGAATTAAAAAAAGGTGAGACTCTTGCAATCGTTGGTGAATCTGGTTCAGGAAAATCTGTAACTACCA
GAACTTTAATTGGTTTAAATGCTAAAAATTCAGAGATATCAGGGAATGTTCAATTTAAGGGGCGTAACCTTGTTGAACTA
TCAGAAGAAGAGTGGACTAAGGTACGCGGGAATGAGATTTCTATGATTTTCCAAGACCCTATGACTAGTTTGGATCCAAC
GATGAAAATTGGCATGCAAATAGCAGAACCAATGATGATTCATCAAAAAATTTCAAAAAAGGATGCTTTAAAATTAGCTC
TTGAGCTAATGAAAGATGTAGGTATCCCAAATGCTGAAGAGCATATTAATGATTACCCACATCAGTGGTCTGGAGGAATG
CGCCAACGTGCGGTTATAGCGATTGCTTTAGCTGCTGATCCTGAAATTCTTATTGCTGATGAACCAACGACTGCTTTAGA
TGTAACAATTCAAGCACAAATTTTGAACTTAATGAAAAAAATTCAAGCAGAACGAGACTCCTCCATTGTTTTCATAACTC
ATGACTTAGGGGTCGTTGCAGGGATGGCAGACCGTGTAGCAGTTATGTATGCAGGGAAAATTGTTGAATTTGGAACTGTT
GATGAAGTCTTTTATAATCCACAACATCCATATACTTGGGGATTATTGAATTCAATGCCGACAACCGACACAGAATCAGG
TAGTTTAGAGTCAATTCCGGGAACACCACCAGATTTGTTGAACCCACCTAAAGGAGATGCATTTGCAGCTCGTAATGAAT
TTGCATTAGATATTGATCATGAAGAAGAACCACCGTACTTCAAAGTTTCAGAAACACATTTCGCTGCTACATGGCTTTTA
GATGAAAGATCACCTAAGGTGCTTCCTCCATTACCGATCCAAAATCGTTGGGAAAAATGGAACGAGATTGAAGGGAGGAA
AGCCTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(27-183)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(235-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppD Streptococcus mutans UA159

78.963

99.713

0.787
  amiE Streptococcus salivarius strain HSISS4

55.457

97.414

0.54
  amiE Streptococcus thermophilus LMG 18311

54.867

97.414

0.534
  amiE Streptococcus thermophilus LMD-9

54.867

97.414

0.534

Multiple sequence alignment