Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   C0J56_RS20915 Genome accession   NZ_CP025542
Coordinates   4670844..4671200 (-) Length   118 a.a.
NCBI ID   WP_109754379.1    Uniprot ID   A0A6N1CKI3
Organism   Pseudomonas fluorescens strain 2P24     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4665844..4676200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0J56_RS20890 (C0J56_20880) - 4666492..4667052 (-) 561 WP_134925244.1 DUF1285 domain-containing protein -
  C0J56_RS20895 (C0J56_20885) - 4667066..4667671 (-) 606 WP_134925245.1 DUF4823 domain-containing protein -
  C0J56_RS20900 (C0J56_20890) - 4667892..4668859 (-) 968 Protein_4008 radical SAM protein -
  C0J56_RS20905 (C0J56_20895) - 4669015..4669653 (-) 639 WP_109754377.1 TetR/AcrR family transcriptional regulator -
  C0J56_RS20910 (C0J56_20900) - 4670038..4670832 (-) 795 WP_134925246.1 TatD family hydrolase -
  C0J56_RS20915 (C0J56_20905) pilZ 4670844..4671200 (-) 357 WP_109754379.1 PilZ domain-containing protein Machinery gene
  C0J56_RS20920 (C0J56_20910) - 4671243..4672232 (-) 990 WP_109754380.1 DNA polymerase III subunit delta' -
  C0J56_RS20925 (C0J56_20915) tmk 4672225..4672857 (-) 633 WP_134925247.1 dTMP kinase -
  C0J56_RS20930 (C0J56_20920) mltG 4672878..4674038 (-) 1161 WP_134925248.1 endolytic transglycosylase MltG -
  C0J56_RS20935 (C0J56_20925) pabC 4674042..4674857 (-) 816 WP_134925249.1 aminodeoxychorismate lyase -
  C0J56_RS20940 (C0J56_20930) fabF 4674857..4676101 (-) 1245 WP_134925250.1 beta-ketoacyl-ACP synthase II -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12832.75 Da        Isoelectric Point: 9.5113

>NTDB_id=219368 C0J56_RS20915 WP_109754379.1 4670844..4671200(-) (pilZ) [Pseudomonas fluorescens strain 2P24]
MNEPVSPGPRNGILSLTIKDKSVLYAAYMPFIKNGGLFIPTNKNYRLGDEVFMLLSLMDEAEKIPVAGKVIWMTPKGAQG
NRAAGVGVQFNDGDNSARNQIETHLAGSLKSDRPTHTM

Nucleotide


Download         Length: 357 bp        

>NTDB_id=219368 C0J56_RS20915 WP_109754379.1 4670844..4671200(-) (pilZ) [Pseudomonas fluorescens strain 2P24]
ATGAACGAACCTGTCAGTCCCGGGCCGCGCAACGGCATCCTGTCTTTGACCATCAAGGACAAGTCGGTGCTTTACGCCGC
CTATATGCCCTTTATCAAGAACGGTGGGCTGTTCATTCCCACCAACAAGAATTATCGCTTGGGCGATGAAGTGTTCATGC
TCTTGAGCCTGATGGATGAAGCGGAAAAGATCCCGGTCGCCGGCAAGGTGATCTGGATGACGCCCAAAGGTGCCCAGGGC
AACCGGGCCGCTGGTGTTGGCGTGCAGTTCAACGATGGCGACAATTCGGCCCGCAATCAGATCGAAACCCACTTGGCCGG
CTCCCTGAAGTCCGACCGTCCCACCCATACGATGTAG

Domains

Predicted by InterProScan.

PilZ domain (PilZ)

(17-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N1CKI3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

48.148

91.525

0.441
  pilZ Legionella pneumophila strain ERS1305867

48.148

91.525

0.441