Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   B4W62_RS01855 Genome accession   NZ_CP019977
Coordinates   371721..372905 (+) Length   394 a.a.
NCBI ID   WP_058914579.1    Uniprot ID   -
Organism   Campylobacter coli strain aerotolerant OR12     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 366721..377905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B4W62_RS01840 - 367435..368166 (+) 732 WP_002787833.1 class II aldolase/adducin family protein -
  B4W62_RS01845 - 368163..369659 (+) 1497 WP_058914577.1 sugar phosphate nucleotidyltransferase -
  B4W62_RS01850 - 369697..371724 (+) 2028 WP_058914578.1 capsular polysaccharide biosynthesis protein -
  B4W62_RS01855 kpsS 371721..372905 (+) 1185 WP_058914579.1 capsule biosynthesis protein Regulator
  B4W62_RS01860 - 372973..374094 (+) 1122 WP_057032360.1 DUF829 domain-containing protein -
  B4W62_RS01865 - 374091..375461 (+) 1371 WP_002829447.1 cytochrome P450 -
  B4W62_RS01870 - 375458..375880 (+) 423 WP_002800011.1 hypothetical protein -
  B4W62_RS01875 acpS 375883..376230 (-) 348 WP_002779165.1 holo-ACP synthase -
  B4W62_RS01880 fliL 376230..376766 (-) 537 WP_002779164.1 flagellar basal body-associated protein FliL -

Sequence

Protein


Download         Length: 394 a.a.        Molecular weight: 46745.25 Da        Isoelectric Point: 9.9162

>NTDB_id=219363 B4W62_RS01855 WP_058914579.1 371721..372905(+) (kpsS) [Campylobacter coli strain aerotolerant OR12]
MRFSDKIKKEFSGKNILLLQGPVGTFFHRLALKMRKNEAKIFKLNFNGGDFFFYPSGKRCKCDKKDLENFYENFFKEKKI
DTIVMYNDCRLIHAKAIKVARTLGIDIWIFEEGYLRPYCITFEKDGVNANSSLPRDKNFYLSCSISTQESIKEIPGGFKF
MAFSAFLYWLFSFLLAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKLTEKKLNQKIYSLEKKYFLAILQVYNDTQIKHH
YKKSIEEFIEETILSFANHARAKSYLVFKHHPMDRGYRNYSKLIDELSQKYHVEGRIFYVHDTYLPTLLKNALGCITINS
TVGLSAILEGCPTKVCGNAFYDFEGLAYPKKLQFFWREAHAYKPNPSLVLNFKNYLLNTNQFNGNFYKNSFLSR

Nucleotide


Download         Length: 1185 bp        

>NTDB_id=219363 B4W62_RS01855 WP_058914579.1 371721..372905(+) (kpsS) [Campylobacter coli strain aerotolerant OR12]
ATGAGATTTAGCGATAAAATTAAAAAAGAATTTAGTGGTAAAAATATCTTATTGTTGCAAGGACCTGTAGGAACTTTTTT
TCACCGTCTTGCTTTAAAAATGAGAAAAAATGAAGCCAAAATTTTCAAGCTTAATTTTAACGGGGGAGATTTCTTTTTTT
ATCCGAGTGGAAAAAGATGTAAATGTGATAAAAAAGATCTTGAAAATTTTTATGAAAATTTTTTCAAAGAGAAAAAAATA
GATACCATTGTGATGTACAATGACTGCCGTTTGATCCATGCAAAAGCTATCAAAGTAGCTAGAACGCTTGGTATTGACAT
TTGGATTTTTGAAGAGGGGTATTTAAGGCCTTATTGTATTACTTTTGAAAAAGATGGGGTCAATGCAAACTCCTCCTTGC
CTCGTGATAAAAATTTCTATCTTTCTTGCAGTATTTCTACGCAAGAAAGCATAAAAGAAATTCCAGGCGGTTTTAAATTT
ATGGCCTTCAGTGCTTTTTTGTATTGGTTGTTTTCTTTTTTACTAGCACCTTTTTTTAACAACAAACTTCATCATCGCAC
CCTATATCCTTTTGAATTTTTATTTTGGTTTAGATCTTTATATAGAAAATACCTTTATAAACTCACAGAAAAAAAACTCA
ATCAAAAAATTTACAGCCTTGAAAAAAAGTATTTTTTGGCTATTTTGCAGGTTTATAATGATACGCAGATTAAGCACCAT
TATAAAAAAAGCATAGAAGAATTTATAGAAGAAACCATCCTTTCTTTTGCAAATCATGCAAGGGCAAAGTCTTATCTTGT
CTTTAAGCATCATCCTATGGATAGGGGATATAGAAATTATTCTAAACTTATAGATGAGCTAAGTCAAAAATATCATGTAG
AAGGAAGAATTTTCTATGTGCACGATACTTATTTACCTACTCTTTTAAAAAATGCTTTAGGTTGTATTACGATCAATTCT
ACAGTAGGTTTAAGTGCTATTTTAGAGGGTTGTCCTACTAAGGTTTGTGGAAATGCTTTTTATGATTTTGAAGGCCTAGC
TTATCCTAAAAAACTCCAATTTTTTTGGCGCGAAGCTCATGCTTATAAACCCAATCCTAGCTTGGTTTTAAATTTCAAAA
ACTATCTTTTAAATACAAATCAGTTCAATGGCAATTTTTACAAAAATTCTTTTTTAAGTCGATAA

Domains

Predicted by InterproScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(82-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

86.294

100

0.863

Multiple sequence alignment