Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   C0J56_RS11190 Genome accession   NZ_CP025542
Coordinates   2425527..2426144 (+) Length   205 a.a.
NCBI ID   WP_134923718.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain 2P24     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2420527..2431144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0J56_RS11165 (C0J56_11165) - 2420849..2422255 (+) 1407 WP_134923713.1 ABC transporter substrate-binding protein -
  C0J56_RS11170 (C0J56_11170) - 2422398..2423180 (+) 783 WP_134923714.1 ABC transporter permease -
  C0J56_RS11175 (C0J56_11175) - 2423180..2424028 (+) 849 WP_134923715.1 ABC transporter ATP-binding protein -
  C0J56_RS11180 (C0J56_11180) - 2424025..2424987 (+) 963 WP_134923716.1 HEAT repeat domain-containing protein -
  C0J56_RS11185 (C0J56_11185) - 2424984..2425256 (+) 273 WP_134923717.1 gamma-butyrobetaine hydroxylase-like domain-containing protein -
  C0J56_RS11190 (C0J56_11190) dinR/lexA 2425527..2426144 (+) 618 WP_134923718.1 transcriptional repressor LexA Regulator
  C0J56_RS11195 (C0J56_11195) imuA 2426144..2426767 (+) 624 WP_134923719.1 translesion DNA synthesis-associated protein ImuA -
  C0J56_RS11200 (C0J56_11200) - 2426775..2428196 (+) 1422 WP_134923720.1 DNA polymerase Y family protein -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 22494.96 Da        Isoelectric Point: 5.8345

>NTDB_id=219345 C0J56_RS11190 WP_134923718.1 2425527..2426144(+) (dinR/lexA) [Pseudomonas fluorescens strain 2P24]
MYSMTTLTPRRAAILTFIRERIADQGQPPSLAEISEAFGFASRSVARKHVLALSEAGFIEVNPHQARGIRLLNQPPRPEL
LDVPVLGRVAAGLPISADAEVYSRLMLDPAIFTKAPDYLLRVQGDSMIEDGILDGDLVGVQRTPQASNGQIVVARLDGEV
TIKRFERMGERVRLLPRNPAYQPIIVEADQDLAIEGVFCGLLRQG

Nucleotide


Download         Length: 618 bp        

>NTDB_id=219345 C0J56_RS11190 WP_134923718.1 2425527..2426144(+) (dinR/lexA) [Pseudomonas fluorescens strain 2P24]
ATGTACTCCATGACGACTCTCACCCCCCGCCGTGCCGCCATCCTGACCTTCATCCGCGAACGCATCGCCGATCAGGGCCA
GCCTCCCAGCCTCGCTGAAATCAGCGAGGCGTTCGGTTTTGCCTCGCGCAGCGTGGCGCGCAAGCATGTGCTGGCGCTGA
GCGAAGCCGGGTTTATCGAAGTCAATCCGCACCAGGCGCGGGGCATCCGGCTGCTGAACCAGCCGCCACGGCCCGAACTG
CTGGACGTGCCGGTGCTGGGGCGAGTGGCGGCTGGCCTGCCGATCAGTGCCGATGCCGAGGTCTACAGCCGCCTGATGCT
GGACCCGGCGATTTTCACCAAGGCGCCGGATTACCTGCTGCGGGTCCAGGGTGACTCGATGATCGAGGACGGCATTCTCG
ACGGTGACTTGGTGGGCGTGCAGCGCACGCCCCAGGCTTCCAACGGCCAGATCGTCGTGGCGCGCCTGGACGGGGAAGTC
ACCATCAAGCGCTTCGAGCGAATGGGTGAGCGTGTACGTTTGCTGCCACGCAATCCGGCCTATCAACCGATCATCGTCGA
AGCCGATCAGGACCTGGCGATAGAAGGGGTGTTCTGCGGCCTGTTGAGGCAAGGCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(4-68)

Peptidase S24-like (Peptidase_S24)

(84-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

39.024

100

0.39