Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   C0J56_RS09835 Genome accession   NZ_CP025542
Coordinates   2161088..2161696 (-) Length   202 a.a.
NCBI ID   WP_003199651.1    Uniprot ID   A0ABN5GB55
Organism   Pseudomonas fluorescens strain 2P24     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2156088..2166696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0J56_RS09810 (C0J56_09805) - 2156564..2156800 (+) 237 WP_025212748.1 DUF1653 domain-containing protein -
  C0J56_RS09815 (C0J56_09810) topA 2156916..2159528 (+) 2613 WP_134923509.1 type I DNA topoisomerase -
  C0J56_RS09820 (C0J56_09815) - 2159669..2160193 (+) 525 WP_134923510.1 DUF6586 family protein -
  C0J56_RS09825 (C0J56_09820) - 2160300..2160533 (+) 234 WP_003183419.1 hypothetical protein -
  C0J56_RS09830 (C0J56_09825) sulA 2160604..2161077 (-) 474 WP_134923511.1 SOS-induced cell division inhibitor SulA -
  C0J56_RS09835 (C0J56_09830) dinR/lexA 2161088..2161696 (-) 609 WP_003199651.1 transcriptional repressor LexA Regulator
  C0J56_RS09840 (C0J56_09835) - 2161938..2162651 (+) 714 WP_109751581.1 TetR/AcrR family transcriptional regulator -
  C0J56_RS09845 (C0J56_09840) nagZ 2162826..2163824 (+) 999 WP_205419932.1 beta-N-acetylhexosaminidase -
  C0J56_RS09850 (C0J56_09845) - 2163852..2166545 (-) 2694 WP_134923512.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 22256.68 Da        Isoelectric Point: 7.3867

>NTDB_id=219340 C0J56_RS09835 WP_003199651.1 2161088..2161696(-) (dinR/lexA) [Pseudomonas fluorescens strain 2P24]
MLKLTPRQAEILAFIKRCLEDNGYPPTRAEIAQELGFKSPNAAEEHLKALARKGAIEMTPGASRGIRIPGFEAKADETTL
PIIGRVAAGAPILAQQHVEESCNINPSFFHPRADYLLRVHGMSMKDIGIFDGDLLAVHTTREARNGQIVVARIGDEVTVK
RFKRDGSKVWLIAENPEFAPIEVNLKDQDLVIEGLSVGVIRR

Nucleotide


Download         Length: 609 bp        

>NTDB_id=219340 C0J56_RS09835 WP_003199651.1 2161088..2161696(-) (dinR/lexA) [Pseudomonas fluorescens strain 2P24]
ATGCTAAAGCTGACGCCACGCCAAGCAGAGATTCTGGCCTTCATCAAACGCTGCCTCGAAGACAACGGCTACCCGCCGAC
GCGTGCGGAAATCGCCCAGGAACTGGGTTTCAAGTCGCCCAACGCGGCTGAAGAACACCTCAAGGCGCTGGCGCGCAAGG
GTGCGATCGAAATGACCCCGGGCGCGTCCCGTGGCATTCGCATCCCGGGCTTCGAAGCCAAGGCCGACGAAACCACCCTG
CCGATCATTGGCCGGGTGGCGGCAGGCGCACCGATCCTTGCCCAGCAGCATGTCGAGGAATCCTGCAACATCAACCCTTC
GTTCTTCCATCCTCGGGCAGATTACCTGCTTCGTGTACACGGCATGAGCATGAAGGACATCGGCATCTTCGACGGCGACC
TCCTGGCCGTCCACACCACCCGCGAAGCCCGCAATGGCCAGATCGTGGTGGCGCGAATCGGCGACGAAGTCACCGTCAAG
CGCTTCAAGCGCGACGGCAGCAAGGTCTGGCTCATCGCCGAGAATCCTGAGTTCGCGCCCATCGAAGTGAACCTGAAAGA
TCAGGATCTGGTCATCGAAGGCTTGAGTGTCGGCGTCATTCGCCGCTAA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(1-65)

Peptidase S24-like (Peptidase_S24)

(81-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

37.379

100

0.381