Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   C0J56_RS08720 Genome accession   NZ_CP025542
Coordinates   1910959..1911294 (+) Length   111 a.a.
NCBI ID   WP_134923358.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain 2P24     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1905959..1916294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0J56_RS08705 (C0J56_08705) - 1906746..1907729 (+) 984 WP_134923355.1 SDR family oxidoreductase -
  C0J56_RS08710 (C0J56_08710) - 1907729..1908745 (+) 1017 WP_134923356.1 glycosyltransferase family 4 protein -
  C0J56_RS08715 (C0J56_08715) - 1908857..1910845 (+) 1989 WP_134923357.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  C0J56_RS08720 (C0J56_08720) comEA/comE1 1910959..1911294 (+) 336 WP_134923358.1 helix-hairpin-helix domain-containing protein Machinery gene
  C0J56_RS08725 (C0J56_08725) - 1911430..1912281 (+) 852 WP_134923359.1 DUF1989 domain-containing protein -
  C0J56_RS08730 (C0J56_08730) - 1912460..1912627 (-) 168 WP_003183831.1 DUF2897 family protein -
  C0J56_RS08735 (C0J56_08735) eat 1912748..1914112 (-) 1365 WP_134923360.1 ethanolamine permease -
  C0J56_RS08740 (C0J56_08740) kdpF 1914529..1914618 (+) 90 WP_033033323.1 K(+)-transporting ATPase subunit F -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 11767.55 Da        Isoelectric Point: 5.1486

>NTDB_id=219337 C0J56_RS08720 WP_134923358.1 1910959..1911294(+) (comEA/comE1) [Pseudomonas fluorescens strain 2P24]
MQTGYFYSLVFALLTSLSVAAIAGPAAPPEAARAPLVLDVDVKAKTAKVDLNLADAPTLQRELAGIGEAKAKSIVAYRES
NGPFSSVEELLEVKGIGKAILDRNRDRLEVN

Nucleotide


Download         Length: 336 bp        

>NTDB_id=219337 C0J56_RS08720 WP_134923358.1 1910959..1911294(+) (comEA/comE1) [Pseudomonas fluorescens strain 2P24]
ATGCAGACTGGCTATTTCTACTCCCTGGTTTTTGCATTGCTTACCAGCCTTTCAGTTGCCGCTATCGCTGGGCCTGCTGC
TCCGCCCGAGGCCGCCAGGGCACCCTTGGTGTTGGACGTTGACGTCAAGGCGAAAACTGCAAAGGTGGATCTTAACCTAG
CGGACGCACCGACGCTGCAGCGCGAATTGGCGGGGATAGGCGAGGCCAAGGCTAAGTCGATTGTTGCATATCGTGAAAGT
AATGGGCCCTTCTCTTCGGTTGAGGAGTTGCTAGAGGTCAAAGGCATTGGCAAGGCGATTCTTGATAGGAATCGTGACAG
GCTGGAAGTGAACTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(46-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.952

94.595

0.387