Detailed information NTG0219330

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: C0J56_RS06040
• Genome accession: NZ_CP025542
• Coordinates: 1346282..1347289 (+)
• Length: 335 a.a.
• NCBI ID: WP_047227588.1
• Uniprot ID: A0ABM6UAE2
• Organism: Pseudomonas fluorescens strain 2P24
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1341282..1352289

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C0J56_RS06010 (C0J56_06020)	fghA	1341287..1342132 (+)	846	WP_134922996.1	S-formylglutathione hydrolase	-
C0J56_RS06015 (C0J56_06025)	ispF	1342176..1342649 (+)	474	WP_109756625.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
C0J56_RS06020 (C0J56_06030)	truD	1342646..1343704 (+)	1059	WP_134922997.1	tRNA pseudouridine(13) synthase TruD	-
C0J56_RS06025 (C0J56_06035)	surE	1343692..1344441 (+)	750	WP_109756623.1	5'/3'-nucleotidase SurE	-
C0J56_RS06030 (C0J56_06040)	-	1344483..1345118 (+)	636	WP_161796107.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
C0J56_RS06035 (C0J56_06045)	-	1345330..1346175 (+)	846	WP_134922998.1	peptidoglycan DD-metalloendopeptidase family protein	-
C0J56_RS06040 (C0J56_06050)	rpoS	1346282..1347289 (+)	1008	WP_047227588.1	RNA polymerase sigma factor RpoS	Regulator
C0J56_RS06050 (C0J56_06060)	fdxA	1347780..1348103 (-)	324	WP_134923000.1	ferredoxin FdxA	-
C0J56_RS06055 (C0J56_06065)	mutS	1348247..1350814 (-)	2568	WP_167659376.1	DNA mismatch repair protein MutS	-
C0J56_RS06060 (C0J56_06070)	-	1351520..1351873 (-)	354	WP_134923002.1	DUF6124 family protein	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38218.38 Da
• Isoelectric Point: 4.9536

>NTDB_id=219330 C0J56_RS06040 WP_047227588.1 1346282..1347289(+) (rpoS) [Pseudomonas fluorescens strain 2P24]
MALSKEVPEFDIDDEVLLMETGIAMDSMSNDEGATPPSVRAKSRHSASLKQHKYIDYTRALDATQLYLNEIGFSPLLSPE
EEVHFARLSQSGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTI
ERAIMNQTRTIRLPIHVVKELNVYLRAARELTQKLDHEPSPEEIANLLEKPVGEVKRMLGLNERVSSVDVSLGPDSDKTL
LDTLTDDRPTDPCELLQDDDLSQSIDQWLSELTDKQREVVIRRFGLRGHESSTLEDVGLEIGLTRERVRQIQVEGLKRLR
EILEKNGLSSESLFQ

Nucleotide

• Length: 1008 bp

>NTDB_id=219330 C0J56_RS06040 WP_047227588.1 1346282..1347289(+) (rpoS) [Pseudomonas fluorescens strain 2P24]
ATGGCTCTCAGTAAAGAAGTGCCGGAGTTTGACATCGACGATGAGGTTCTCCTTATGGAGACCGGCATCGCTATGGATTC
GATGTCGAATGATGAAGGGGCGACTCCACCTTCCGTTCGTGCCAAATCCAGACACTCCGCTTCACTTAAACAACATAAGT
ACATCGATTACACCCGGGCGCTGGACGCCACTCAGCTGTACCTCAACGAAATCGGTTTCTCGCCACTGCTTTCCCCCGAG
GAAGAAGTTCATTTTGCGCGGTTGTCGCAAAGTGGCGACCCGGCCGGTCGAAAACGCATGATTGAAAGCAACTTGCGCCT
GGTGGTGAAAATCGCCCGACGCTACGTCAATCGCGGGCTTTCGCTGCTGGACCTGATCGAAGAGGGCAACCTGGGCCTGA
TTCGCGCCGTGGAAAAATTCGACCCCGAACGCGGCTTCCGTTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATC
GAACGGGCGATCATGAATCAGACCCGGACCATCCGGTTGCCGATTCATGTGGTCAAGGAGCTGAACGTCTACCTGCGGGC
CGCCCGTGAGTTGACCCAGAAACTCGACCATGAACCCTCACCCGAAGAAATCGCCAACCTGCTGGAAAAACCGGTAGGCG
AGGTCAAGCGCATGCTTGGGCTCAACGAGCGGGTGTCCTCGGTGGACGTTTCGCTGGGACCGGACTCGGATAAAACCCTG
CTCGATACCCTCACCGACGATCGCCCCACGGACCCGTGCGAGCTGCTTCAGGATGATGACCTGTCCCAGAGCATCGACCA
GTGGCTTTCGGAGCTGACCGACAAGCAACGGGAAGTGGTGATTCGCCGCTTCGGCTTGCGAGGTCATGAAAGCAGCACCC
TGGAAGATGTAGGCCTGGAGATCGGCCTGACCCGTGAGCGGGTCCGGCAGATCCAGGTAGAAGGCCTCAAGCGTTTGCGA
GAGATCCTGGAGAAAAACGGCTTGTCGAGCGAGTCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70, region 4 (Sigma70_r4) (268-321)

• Sigma-70 region 2 (Sigma70_r2) (100-169)

• Sigma-70 region 3 (Sigma70_r3) (180-254)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (62-94)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	65.868	99.701	0.657