Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   B2K12_RS03315 Genome accession   NZ_CP019965
Coordinates   639670..640107 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni strain NCTC12662     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 634670..645107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B2K12_RS03295 (B2K12_03295) kdpD 635158..637089 (+) 1932 WP_002856839.1 sensor histidine kinase KdpD -
  B2K12_RS03300 (B2K12_03300) uvrB 637084..639057 (-) 1974 WP_044305931.1 excinuclease ABC subunit UvrB -
  B2K12_RS03305 (B2K12_03305) - 639211..639441 (+) 231 WP_002852327.1 hypothetical protein -
  B2K12_RS03310 (B2K12_03310) - 639431..639673 (+) 243 WP_002854947.1 hypothetical protein -
  B2K12_RS03315 (B2K12_03315) Cj0683 639670..640107 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  B2K12_RS03320 (B2K12_03320) priA 640089..641942 (+) 1854 WP_079005308.1 primosomal protein N' -
  B2K12_RS03325 (B2K12_03325) cipA 641952..643347 (-) 1396 Protein_637 DUF2972 domain-containing protein -
  B2K12_RS03330 (B2K12_03330) ispG 643493..644566 (+) 1074 WP_044305932.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=219267 B2K12_RS03315 WP_002852324.1 639670..640107(+) (Cj0683) [Campylobacter jejuni strain NCTC12662]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=219267 B2K12_RS03315 WP_002852324.1 639670..640107(+) (Cj0683) [Campylobacter jejuni strain NCTC12662]
ATGAATAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTATCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCACAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAACGCCAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1

Multiple sequence alignment