Detailed information NTG0219255

Bioinformatically predicted

Overview

• Name: scnR
• Type: Regulator
• Locus tag: B2M23_RS18260
• Genome accession: NZ_CP019962
• Coordinates: 3885105..3885800 (-)
• Length: 231 a.a.
• NCBI ID: WP_038351564.1
• Uniprot ID: A0AAC9QXD6
• Organism: Eubacterium limosum strain ATCC 8486
• Function: regulate comX expression (predicted from homology) Competence regulation

Genomic Context

Location: 3880105..3890800

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
B2M23_RS18235 (B2M23_18215)	-	3880147..3881565 (-)	1419	WP_038351567.1	C69 family dipeptidase	-
B2M23_RS18240 (B2M23_18220)	-	3881783..3882832 (-)	1050	WP_038351566.1	response regulator	-
B2M23_RS18250 (B2M23_18230)	-	3883199..3883597 (+)	399	WP_038351565.1	secondary thiamine-phosphate synthase enzyme YjbQ	-
B2M23_RS18255 (B2M23_18235)	-	3883653..3885092 (-)	1440	WP_052237144.1	HAMP domain-containing sensor histidine kinase	-
B2M23_RS18260 (B2M23_18240)	scnR	3885105..3885800 (-)	696	WP_038351564.1	response regulator transcription factor	Regulator
B2M23_RS18265 (B2M23_18245)	-	3885953..3886861 (+)	909	WP_038351563.1	ABC transporter ATP-binding protein	-
B2M23_RS18270 (B2M23_18250)	-	3886861..3887610 (+)	750	WP_038351562.1	ABC transporter permease	-
B2M23_RS18275 (B2M23_18255)	-	3887623..3888357 (+)	735	WP_038351561.1	ABC transporter permease	-
B2M23_RS18280 (B2M23_18260)	-	3888733..3890217 (-)	1485	WP_038351560.1	glycerol kinase	-

Sequence

Protein

• Length: 231 a.a.
• Molecular weight: 25761.04 Da
• Isoelectric Point: 4.8078

>NTDB_id=219255 B2M23_RS18260 WP_038351564.1 3885105..3885800(-) (scnR) [Eubacterium limosum strain ATCC 8486]
MDYIKDKGILLVDDEPELLKLVLKILKNEGFVKVYTASSVAEGMTVFLEKAPDMAVLDVMLPDGEGFELLKFIRASSDIP
VLFLSARGNAEDRFTGFGLGADDYIIKPFLPQELVFRINAILKRAYKNEAPTFTLADATVDLDRAEIIRGEELLPLTAKE
YAILQKLYENAGKIVTIGALCDFVWEGDSYGYEKPLMAHIGRIREKIEADPSHPKSLITVKGLGYKMLVNK

Nucleotide

• Length: 696 bp

>NTDB_id=219255 B2M23_RS18260 WP_038351564.1 3885105..3885800(-) (scnR) [Eubacterium limosum strain ATCC 8486]
ATGGATTACATCAAAGATAAAGGCATTCTTCTGGTTGACGATGAACCAGAGCTTTTAAAGCTGGTGCTTAAGATACTCAA
AAATGAAGGCTTTGTGAAGGTTTATACAGCGTCGAGCGTGGCCGAGGGAATGACCGTTTTCCTGGAAAAAGCTCCTGATA
TGGCCGTGCTTGATGTGATGCTGCCAGATGGTGAGGGTTTTGAGCTGCTCAAATTCATCCGTGCCTCTTCGGATATCCCG
GTGCTTTTTCTATCAGCCAGAGGCAATGCCGAGGACCGGTTCACCGGCTTTGGACTGGGAGCGGATGATTATATTATTAA
GCCCTTTCTGCCGCAGGAGCTTGTGTTTAGGATCAATGCTATTTTAAAACGTGCCTATAAAAATGAAGCGCCGACCTTTA
CTCTGGCTGATGCCACAGTAGATCTGGACCGCGCTGAGATTATCAGGGGAGAGGAGCTTCTGCCCCTTACGGCCAAAGAG
TATGCCATTCTTCAAAAGCTCTATGAAAACGCAGGGAAAATCGTAACCATCGGCGCCCTCTGCGATTTTGTATGGGAGGG
CGACAGCTATGGCTATGAAAAACCGCTCATGGCTCATATCGGGCGTATCCGGGAAAAAATCGAGGCTGACCCCAGCCATC
CAAAGTCACTTATTACAGTCAAAGGGCTGGGCTATAAAATGTTAGTAAATAAATAG

Domains

Predicted by InterproScan.

• Transcriptional regulatory protein, C terminal (Trans_reg_C) (154-227)

• Response regulator receiver domain (Response_reg) (9-118)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
scnR	Streptococcus mutans UA159	50	99.567	0.498