Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   PG_RS09810 Genome accession   NC_002950
Coordinates   2321042..2323900 (-) Length   952 a.a.
NCBI ID   WP_005874279.1    Uniprot ID   Q7MSZ9
Organism   Porphyromonas gingivalis W83     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2316042..2328900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PG_RS09785 (PG2205) - 2316261..2317205 (+) 945 WP_005874296.1 2-dehydropantoate 2-reductase -
  PG_RS09790 (PG2206) - 2317340..2318956 (-) 1617 WP_004585610.1 ABC-F family ATP-binding cassette domain-containing protein -
  PG_RS09795 (PG2207) - 2319232..2320251 (-) 1020 WP_005874290.1 NAD-dependent epimerase/dehydratase family protein -
  PG_RS09800 (PG2208) - 2320422..2320676 (-) 255 WP_010956522.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  PG_RS09805 (PG2209) - 2320764..2321018 (-) 255 WP_004585612.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  PG_RS09810 (PG2210) uvrA 2321042..2323900 (-) 2859 WP_005874279.1 excinuclease ABC subunit UvrA Machinery gene
  PG_RS11880 - 2324573..2324635 (-) 63 WP_230456045.1 hypothetical protein -
  PG_RS11505 - 2324607..2324741 (+) 135 WP_143739006.1 DUF1661 domain-containing protein -
  PG_RS09835 (PG2213) - 2324938..2325120 (-) 183 WP_004585614.1 (2Fe-2S)-binding protein -
  PG_RS09840 (PG2214) - 2325391..2326665 (-) 1275 WP_010956524.1 DUF2851 family protein -
  PG_RS09845 (PG2215) - 2326700..2327785 (-) 1086 WP_005874295.1 mannose-1-phosphate guanylyltransferase -

Sequence

Protein


Download         Length: 952 a.a.        Molecular weight: 105801.58 Da        Isoelectric Point: 5.8862

>NTDB_id=21923 PG_RS09810 WP_005874279.1 2321042..2323900(-) (uvrA) [Porphyromonas gingivalis W83]
MKQQESEHPTSGEAIIIKGARVNNLKNISLTIPRGKLVVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLGRMR
KPECDLIAGVPPAIAIEQRVVSRNPRSTVATSTEIYEYLRLLFARVGRTISPTSGEEVKKHTVADLVAYVADRPIGSKLY
LLVGLQAPQGRSLREHLQIQQQQGYTRIFVAGEMKRIEDILSAETDFSDTASCFLLIDRLVIAEDKADYESRLADSAETA
FFEGNGACLLRIESPEGTVEERMFSNVFEADGRTFQEPSPEMFSFNNPIGACPTCEGFGKVMGIDEDLVVPNKSLSVYEE
CVACWIGAKSQMWKDYFIQKSVPLGFPVHKPYKELSDIERDMLWRGVPTGEPDYPNIGIDDYFSMLQRDMHKIQNRVRLA
HFRGKATCPDCRGMRLKPDALCVRIGGRNISELTALTVEETSAFFEGLQLSEDDLHISRRLLEEIGKRLRFLLEVGLGYL
TLDRLSNTLSGGESQRISLATQLGSSLVGSLYVLDEPSIGLHQRDTHRLIGVLKRLRDLGNTVVVVEHDEETIRSADYII
DIGPKAGRQGGEVVYAGEYDRIDKDTPGYTAAYLTGREKIELPRLRRPWNSYIEVREASKHNLKGVNVRFPLHVLTVVTG
VSGSGKSTLVRDLFYEGVKRILEGGSTQGLACEGIVGDIKSVRDIQYVDQNNFGRSTRSNPVTYIGAYDDIRKLYSALPL
SKQMGYQPYFFSFNKEGGRCEVCKGEGSIVVEMQFMADIVLECEECHGKRFRKEILDVEYCGANIYDLLEMTVNQAVEFF
TDHPKASYTDKIVEKLECLREVGLGYLKLGQSSSTLSGGENQRVKLAAYLGQAKPAPTLFIFDEPTTGLHIHDIRTLLHA
LSALIDKGHSVVVVEHNMEIIKSADCIIDLGPEGGGAGGYLVATGTPEEVMRCDASYTGKWLKEILGNEQRG

Nucleotide


Download         Length: 2859 bp        

>NTDB_id=21923 PG_RS09810 WP_005874279.1 2321042..2323900(-) (uvrA) [Porphyromonas gingivalis W83]
ATGAAGCAGCAGGAAAGCGAGCATCCCACAAGTGGCGAAGCCATCATCATCAAAGGGGCACGCGTCAATAATCTGAAGAA
TATATCGCTGACTATACCGCGGGGCAAGCTGGTCGTGGTGACCGGACTATCCGGTTCGGGCAAGAGTTCTTTGGCTTTCG
ATACGCTCTATGCGGAAGGCCAGAGACGTTACGTGGAGAGCCTGTCTGCCTATGCGCGTCAGTTTCTGGGAAGGATGCGC
AAGCCGGAGTGCGACTTGATCGCCGGTGTGCCTCCTGCCATTGCCATCGAGCAACGCGTAGTAAGCCGCAATCCGAGGAG
TACCGTAGCCACATCGACCGAGATATACGAGTACCTGCGCCTGCTCTTTGCTCGCGTAGGCAGGACCATCTCTCCGACAA
GCGGAGAGGAGGTGAAGAAACATACGGTGGCCGATCTGGTCGCTTACGTTGCCGATCGGCCCATCGGCTCCAAACTGTAT
CTTCTGGTAGGGCTGCAAGCCCCTCAAGGACGTAGTCTGCGTGAGCACTTGCAGATCCAACAGCAGCAGGGCTATACGCG
CATTTTCGTTGCCGGGGAGATGAAGCGGATCGAGGACATTTTATCCGCCGAAACTGATTTCTCCGATACGGCCTCCTGCT
TCCTGCTTATCGATCGGCTGGTGATTGCAGAGGACAAGGCGGACTATGAGTCGCGTCTTGCGGATTCGGCCGAGACAGCT
TTTTTCGAAGGAAACGGGGCGTGCCTGCTGCGCATCGAAAGCCCGGAAGGAACGGTGGAGGAACGGATGTTCAGCAATGT
GTTCGAAGCCGATGGGCGTACCTTTCAGGAGCCGAGTCCGGAGATGTTCAGCTTCAACAATCCTATCGGGGCATGCCCTA
CTTGCGAAGGTTTCGGGAAGGTAATGGGGATCGATGAGGATCTGGTGGTACCGAACAAGTCTCTCTCTGTCTATGAAGAA
TGTGTAGCTTGCTGGATAGGGGCCAAGTCGCAGATGTGGAAGGACTATTTCATCCAAAAGAGTGTGCCACTGGGTTTTCC
CGTACACAAGCCCTACAAAGAGCTATCCGATATCGAACGCGATATGCTGTGGCGTGGTGTACCCACGGGAGAACCGGATT
ACCCGAATATCGGTATCGACGACTATTTCTCTATGCTGCAGAGGGATATGCACAAGATTCAGAACCGTGTCCGGCTGGCG
CATTTTCGCGGCAAAGCCACCTGCCCCGATTGTCGTGGGATGCGACTCAAGCCGGATGCTCTGTGCGTGAGAATAGGCGG
ACGGAATATATCGGAGCTGACGGCTCTGACTGTAGAGGAGACGTCGGCATTTTTCGAGGGGCTACAGCTATCGGAAGACG
ATCTACATATAAGCAGACGGCTGCTGGAGGAGATAGGCAAGCGGCTACGCTTCCTGCTCGAAGTGGGGTTGGGGTATCTG
ACACTTGACCGCCTGTCCAATACGCTCTCGGGTGGAGAGAGCCAGCGCATCAGTCTGGCTACGCAGCTCGGCAGCAGCTT
GGTGGGTTCGCTCTACGTGCTGGACGAGCCGAGTATCGGTCTGCATCAGCGAGATACGCATCGGCTTATCGGTGTTCTGA
AGCGACTGCGCGATCTGGGCAATACCGTTGTAGTCGTCGAGCATGACGAGGAGACAATCCGGTCAGCTGATTATATCATC
GACATAGGGCCGAAGGCCGGCCGCCAAGGCGGCGAAGTGGTCTATGCCGGCGAGTATGACCGCATAGACAAGGATACTCC
GGGCTATACGGCGGCTTATCTGACGGGACGAGAGAAGATCGAACTGCCACGCCTGCGTCGTCCATGGAACTCATATATCG
AAGTTCGGGAAGCCTCGAAGCACAATCTGAAAGGGGTGAATGTCCGATTCCCACTGCACGTGCTCACGGTGGTGACCGGT
GTGAGCGGATCGGGAAAGAGTACCTTGGTGCGCGATCTTTTCTACGAAGGAGTAAAAAGGATTCTCGAAGGAGGCAGCAC
ACAAGGGTTAGCCTGCGAGGGCATTGTCGGGGACATCAAGTCTGTCCGAGACATTCAGTACGTGGATCAGAACAATTTCG
GTCGCAGCACCCGCTCCAACCCGGTCACGTACATAGGTGCTTACGATGATATTCGCAAGCTCTACAGTGCATTGCCACTG
TCCAAACAGATGGGATACCAGCCCTATTTCTTCAGTTTCAATAAGGAAGGAGGCCGCTGCGAGGTCTGCAAAGGAGAGGG
CAGTATCGTGGTGGAGATGCAGTTCATGGCCGATATAGTATTGGAGTGTGAAGAGTGTCATGGCAAACGTTTCCGCAAGG
AGATTCTCGATGTGGAGTACTGCGGCGCGAATATTTACGACTTGCTGGAGATGACGGTCAATCAGGCCGTTGAATTTTTC
ACCGATCATCCGAAAGCCAGCTACACGGACAAGATCGTGGAGAAGCTCGAATGTCTTCGAGAGGTCGGACTCGGGTATCT
CAAACTGGGACAGAGCAGCAGTACACTCTCCGGTGGGGAAAACCAACGCGTCAAGCTGGCTGCATATCTGGGACAAGCCA
AACCCGCACCCACGCTTTTCATCTTCGACGAACCGACTACGGGCTTACATATCCATGATATTCGTACCTTGCTGCACGCA
CTGAGTGCTCTTATCGACAAAGGGCATTCGGTAGTGGTGGTAGAGCATAATATGGAGATAATCAAGAGTGCCGACTGTAT
CATCGACTTAGGCCCTGAGGGTGGAGGTGCCGGTGGTTATTTGGTCGCAACAGGTACGCCCGAAGAGGTGATGCGATGCG
ATGCCTCCTATACGGGAAAGTGGTTGAAAGAGATATTGGGAAACGAACAAAGAGGTTGA

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(305-368)

UvrA interaction domain (UvrA_inter)

(142-252)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7MSZ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

44.932

100

0.452
  uvrA Streptococcus pneumoniae TIGR4

44.932

100

0.452
  uvrA Streptococcus pneumoniae D39

44.932

100

0.452

Multiple sequence alignment