Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   A9237_RS22175 Genome accession   NZ_CP019960
Coordinates   1258929..1260110 (+) Length   393 a.a.
NCBI ID   WP_041052758.1    Uniprot ID   -
Organism   Vibrio owensii strain XSBZ03     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1253929..1265110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9237_RS22165 (A9237_22170) - 1256265..1257251 (+) 987 WP_078609695.1 peptidoglycan DD-metalloendopeptidase family protein -
  A9237_RS22170 (A9237_22175) ylqF 1257573..1258517 (+) 945 WP_038897169.1 ribosome biogenesis GTPase YlqF -
  A9237_RS22175 (A9237_22180) cqsA 1258929..1260110 (+) 1182 WP_041052758.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  A9237_RS22180 (A9237_22185) - 1260266..1262311 (-) 2046 WP_032801937.1 hybrid sensor histidine kinase/response regulator -
  A9237_RS22185 (A9237_22190) - 1262615..1263232 (+) 618 WP_033005631.1 HAD family hydrolase -
  A9237_RS22190 (A9237_22195) - 1263300..1263848 (-) 549 WP_005437703.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 44104.16 Da        Isoelectric Point: 5.8737

>NTDB_id=219215 A9237_RS22175 WP_041052758.1 1258929..1260110(+) (cqsA) [Vibrio owensii strain XSBZ03]
MSDKLKTKRLPSFVEERLDFYIQDLIEQNENQKHLVLGKRPQPEAVVMQSNDYLSLSHNQQIQKAHRDAISEHDDNVVMS
AIFLQDDDSKPAFETQLADYVGMGSCLLSQSGWAANIGLLQTICPPETPVYIDFFAHMSLWEGIRAAGAQAHPFMHNNMS
HLRKQIQRHGSGVIVVDSVYSTIGTIAPLHDIYEMAREFDCALVVDESHSLGTHGPNGSGLVKALELTDQVDFITVSLAK
TFAYRAGAILGPEKLARTLPFVAFPAIFSSTVLPQEVIRLEKTLEVIKDADDKRTMLFNRAKELRTGLKQIGFNIRSESQ
IIALECGSERNTERVRDFLEERNVFGAVFCRPATGKNKNIIRFSINADMTSRDIDHVLTACQEAYNHPELEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=219215 A9237_RS22175 WP_041052758.1 1258929..1260110(+) (cqsA) [Vibrio owensii strain XSBZ03]
ATGAGTGATAAACTGAAAACGAAACGACTTCCTTCCTTTGTTGAGGAACGCCTGGACTTTTATATTCAAGATCTGATTGA
ACAGAACGAGAACCAAAAGCACTTGGTATTAGGGAAACGACCGCAACCCGAAGCTGTGGTCATGCAGAGTAACGATTACT
TATCGCTATCTCATAACCAACAGATTCAAAAAGCTCACCGAGATGCGATATCTGAGCATGATGATAACGTCGTTATGTCT
GCGATTTTCTTGCAAGATGACGATTCGAAGCCTGCATTTGAAACGCAACTTGCGGATTACGTCGGCATGGGGAGTTGCTT
GCTTTCCCAGTCGGGATGGGCTGCGAATATAGGATTGTTGCAGACCATTTGTCCGCCTGAAACGCCGGTTTATATCGACT
TCTTTGCGCATATGTCATTGTGGGAAGGTATTCGGGCCGCGGGAGCACAAGCACATCCGTTCATGCACAACAACATGAGC
CACTTGCGCAAGCAGATCCAGCGTCATGGCTCAGGCGTTATCGTGGTAGATTCGGTCTACAGCACGATAGGCACGATCGC
CCCACTCCACGACATCTACGAAATGGCGCGTGAGTTTGATTGTGCTTTAGTGGTGGATGAATCCCACTCGTTAGGAACAC
ACGGGCCTAACGGCTCTGGCTTAGTTAAAGCACTGGAGCTCACTGATCAAGTAGATTTCATTACTGTCAGTCTGGCAAAA
ACCTTTGCTTATCGAGCAGGAGCGATTCTCGGCCCAGAAAAACTGGCTCGAACGTTACCATTCGTTGCGTTCCCGGCCAT
TTTTAGTTCAACGGTTCTGCCACAAGAAGTCATTCGACTAGAGAAAACGCTCGAAGTGATTAAAGACGCCGATGATAAAC
GAACCATGCTGTTCAATCGCGCTAAAGAGCTCAGAACGGGCCTTAAGCAGATTGGTTTTAATATCCGCAGCGAATCACAA
ATTATCGCGTTAGAGTGCGGTAGCGAGCGTAATACCGAGCGTGTACGTGACTTCTTGGAAGAACGTAATGTCTTTGGCGC
TGTATTTTGTCGCCCAGCAACGGGAAAGAATAAAAACATTATTCGATTCTCAATCAACGCCGACATGACGTCTCGTGACA
TTGACCATGTGCTGACAGCATGTCAGGAAGCGTATAACCATCCAGAACTAGAGTTTGTTTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

57.216

98.728

0.565

Multiple sequence alignment