Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   A9237_RS13575 Genome accession   NZ_CP019959
Coordinates   2944911..2946314 (+) Length   467 a.a.
NCBI ID   WP_005439670.1    Uniprot ID   -
Organism   Vibrio owensii strain XSBZ03     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2939911..2951314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9237_RS13570 (A9237_13570) uvrB 2942555..2944585 (+) 2031 WP_078608365.1 excinuclease ABC subunit UvrB -
  A9237_RS13575 (A9237_13575) luxO 2944911..2946314 (+) 1404 WP_005439670.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  A9237_RS13580 (A9237_13580) luxU 2946311..2946655 (+) 345 WP_078608366.1 quorum-sensing phosphorelay protein LuxU -
  A9237_RS13585 (A9237_13585) - 2946753..2947646 (-) 894 WP_078608367.1 YvcK family protein -
  A9237_RS13590 (A9237_13590) moaA 2947944..2948933 (+) 990 WP_005439665.1 GTP 3',8-cyclase MoaA -
  A9237_RS13595 (A9237_13595) moaB 2949035..2949547 (+) 513 WP_005433210.1 molybdenum cofactor biosynthesis protein B -
  A9237_RS13600 (A9237_13600) moaC 2949574..2950050 (+) 477 WP_005439664.1 cyclic pyranopterin monophosphate synthase MoaC -
  A9237_RS13605 (A9237_13605) moaD 2950050..2950307 (+) 258 WP_078608368.1 molybdopterin synthase sulfur carrier subunit -
  A9237_RS13610 (A9237_13610) moaE 2950309..2950764 (+) 456 WP_009707279.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 52180.70 Da        Isoelectric Point: 5.8849

>NTDB_id=219211 A9237_RS13575 WP_005439670.1 2944911..2946314(+) (luxO) [Vibrio owensii strain XSBZ03]
MQQITEGQKSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLHAVKKSH
PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSHEEGKSFIRFAQDVIERFNSYEWPGNVRQLQNVLRNIVVLNNGKEITLDMLPPPLNQPVVRQS
ISKFIEPEIMTVSDIMPLWMTEKMAIEQAIQACDGNIPRAAGYLDVSPSTIYRKLQAWNSKDEKQNV

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=219211 A9237_RS13575 WP_005439670.1 2944911..2946314(+) (luxO) [Vibrio owensii strain XSBZ03]
ATGCAACAAATAACAGAAGGTCAAAAGTCTCGTTATCTACTAATGGTAGAAGACACCGCATCCGTTGCGGCATTGTACCG
TTCTTACCTGACGCCTCTCGGCATCGATATTAATATTGTTGGAACAGGCAGAGACGCCATCGAAAGCCTGAACCATCGAA
TTCCCGATCTGATTCTGCTCGATCTCCGCTTACCTGATATGACGGGGATGGACGTATTGCACGCGGTGAAGAAAAGCCAC
CCAGACGTGCCAATCATCTTTATGACAGCTCATGGCTCTATCGATACTGCGGTAGAAGCGATGCGTCATGGTTCTCAAGA
CTTCTTAATCAAACCATGTGAAGCCGACCGTCTTCGTGTCACGGTGAACAACGCAATTCGCAAAGCAACCAAGCTTAAGA
ATGAAGCGGATAACCCGGGTAACCAAAATTACCAAGGCTTTATTGGCAGTAGCCAAACCATGCAGCAGGTTTATCGCACC
ATTGACTCCGCAGCGAGCAGTAAAGCGAGTATTTTTATCACGGGTGAAAGTGGTACCGGTAAAGAAGTGTGTGCCGAAGC
CATTCACGCAGCAAGCAAACGTGGTGATAAGCCGTTTATCGCTATTAACTGTGCTGCGATCCCGAAAGATCTGATTGAAA
GTGAATTGTTTGGTCACGTAAAAGGCGCGTTTACCGGTGCTGCGAATGATCGCCAAGGTGCGGCCGAGCTTGCCGATGGT
GGCACGCTGTTCCTTGATGAATTGTGTGAAATGGACTTAGATCTTCAAACTAAGTTATTGCGCTTTATCCAAACGGGTAC
TTTCCAAAAAGTGGGCTCTTCAAAGATGAAGAGTGTCGACGTGCGATTTGTATGTGCGACCAACCGCGACCCCTGGAAAG
AAGTGCAAGAAGGCCGTTTCCGTGAAGACTTGTACTACCGTTTGTACGTGATTCCTTTGCACCTTCCACCGTTGCGTGAG
CGCGGCGAAGACGTGATTGAAATCGCGTACTCGCTACTGGGTTATATGTCTCACGAGGAAGGCAAGAGTTTTATCCGTTT
TGCACAAGATGTGATTGAACGTTTCAACAGTTACGAATGGCCGGGTAACGTTCGTCAGTTGCAAAACGTACTGCGTAATA
TCGTTGTACTGAACAACGGTAAAGAGATTACGTTGGACATGCTGCCACCACCACTGAATCAACCGGTGGTTCGTCAATCA
ATTTCAAAATTTATTGAACCTGAAATTATGACGGTGTCAGACATTATGCCGCTTTGGATGACTGAAAAAATGGCCATCGA
GCAGGCGATTCAGGCGTGTGACGGCAACATTCCACGCGCCGCGGGCTACCTAGATGTCAGCCCCTCGACGATTTATCGCA
AGTTGCAAGCTTGGAATAGCAAGGACGAAAAACAGAACGTATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-458)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.384

95.931

0.829

Multiple sequence alignment