Detailed information    

insolico Bioinformatically predicted

Overview

Name   chiS   Type   Regulator
Locus tag   A9237_RS11520 Genome accession   NZ_CP019959
Coordinates   2495510..2498896 (-) Length   1128 a.a.
NCBI ID   WP_005439415.1    Uniprot ID   A0A812FE66
Organism   Vibrio owensii strain XSBZ03     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 2490510..2503896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9237_RS11505 (A9237_11505) - 2490806..2491831 (-) 1026 WP_041058686.1 ABC transporter permease -
  A9237_RS11510 (A9237_11510) - 2491834..2492820 (-) 987 WP_005425282.1 ABC transporter permease -
  A9237_RS11515 (A9237_11515) - 2492991..2494673 (-) 1683 WP_020196582.1 ABC transporter substrate-binding protein -
  A9237_RS11520 (A9237_11520) chiS 2495510..2498896 (-) 3387 WP_005439415.1 response regulator Regulator
  A9237_RS11530 (A9237_11530) rsmC 2499125..2500150 (-) 1026 WP_078608211.1 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC -
  A9237_RS11535 (A9237_11535) - 2500227..2501312 (-) 1086 WP_009707537.1 AI-2E family transporter -
  A9237_RS11545 (A9237_11540) hemL 2501671..2502966 (-) 1296 WP_009707535.1 glutamate-1-semialdehyde 2,1-aminomutase -
  A9237_RS11550 (A9237_11545) erpA 2503213..2503554 (+) 342 WP_005439421.1 iron-sulfur cluster insertion protein ErpA -

Sequence

Protein


Download         Length: 1128 a.a.        Molecular weight: 127383.21 Da        Isoelectric Point: 5.4431

>NTDB_id=219210 A9237_RS11520 WP_005439415.1 2495510..2498896(-) (chiS) [Vibrio owensii strain XSBZ03]
MFKFYKKQKFKRLQSTLMTAFLVLSITPLTITAIFFLQSHSKDLQEQSTSHLLSVRDTKQQQIIDYFAAQETEVMGFVRS
ELAYASGGRFYGLVNAFSRLGHDIDEARENAQHRYIKGSGDQIKTSILPESSNYVGSERYRLLHKRYHWAYLELLKRSDF
NDILLVDIDGNVTYSINKDDNYGTNLLTGRYKETALGRTFKRLSEDVSARRKVNEDYTPVVVSDFDIENGKQVAWLGAPI
VQQGYLHSYAMFRLPNNGITKLIAEINRDSSIETLLVGSDHKPRTINTKQEDIQNSLEIVDKALAGDTEVGTYSNRLGEE
MIAAFAPIETRGLTWALVVQLPEKEAFARVHQLEKLFVIAMLIAIVLVVIASHYLSNFITSPLLKLTWAAEKVSAGDLDE
TTFNTERKDEIGRLAISFERMQRSIREKIQTIKQQNEELESNIKLIQKQNEELQLADKLKDEFLATTSHELRTPLHGMVG
IAETLVSGANGAIPASQKYQLDIIIKSGQRLANLVDDLLDYHKMRYGSMDIQKSAVSLASATRLVLELSGHLLGNKTIRI
INQVPADLKAVSADPQRLEQVLYNLIGNAIKYTSEGKIVISAMVVDDQVRVQVVDTGQGIPAEHLEHIFEPLIQAGQDAS
RYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLPLASEEEIQATQSLAARGHFQIPEANFENNDDLSLPENPD
GPLLYVADDEPVNLRVLESFLRLEGYRVRTISDGPETLALIEQEKPELLLLDIMMPGMSGYQVCSELRETYDHAELPIIM
LTALSQTEDRVRGFEAGANDYLTKPFNKQELAARIQAHLTASKAEMRHIENKLLESELRQRAEVEASLLETQGRLLEQLE
SAPEAIICLREDQRIRFANEAACKLFKRSLEQLKRSSADELIAPKFLTVKQPHYCGKIDIYIEDIRQNIEADILKLPEGS
GLDVMYIFNVGGGANAARIHNLETAVEVLSCYAFDGDKDQLQKLKELGGEFTRLADKALGNKKDKQELLREVLVDTMTHA
LEYWESVTGETKFAFAEQSGLWRVYLDRSTLQTRTLDKYMRIETLPKTPRWRTVLSSIEFILEHCKEQSPERAYIEAQRD
KMQRLLTS

Nucleotide


Download         Length: 3387 bp        

>NTDB_id=219210 A9237_RS11520 WP_005439415.1 2495510..2498896(-) (chiS) [Vibrio owensii strain XSBZ03]
ATGTTTAAATTCTACAAAAAGCAGAAATTTAAGCGCCTGCAAAGCACGCTAATGACCGCATTTTTGGTTCTTAGTATTAC
GCCCCTGACGATCACTGCGATTTTCTTCCTGCAATCACACAGTAAAGATCTCCAAGAGCAAAGTACATCGCACCTGCTCT
CTGTTCGTGATACTAAGCAACAGCAGATCATTGACTACTTCGCTGCGCAAGAAACGGAAGTGATGGGCTTCGTACGTTCA
GAACTTGCCTATGCCAGTGGCGGACGCTTCTACGGCTTAGTCAACGCATTTAGCCGTTTAGGGCACGATATTGACGAAGC
GAGAGAAAACGCACAGCACCGCTACATCAAAGGCAGTGGTGATCAAATCAAAACGTCGATTTTGCCGGAATCGTCCAACT
ATGTTGGCAGTGAACGCTACCGCCTACTCCACAAACGCTACCATTGGGCATACCTAGAACTGCTAAAACGTTCTGATTTC
AATGATATTTTGTTGGTCGACATTGACGGTAATGTCACGTACTCCATCAATAAAGATGACAACTACGGCACAAACCTACT
AACCGGTCGCTATAAAGAGACGGCGTTAGGTCGTACCTTTAAACGTTTATCAGAAGACGTCAGTGCACGCCGAAAAGTCA
ATGAAGATTACACCCCAGTGGTGGTGTCTGACTTTGATATCGAAAACGGAAAGCAAGTTGCTTGGTTAGGTGCGCCTATT
GTTCAGCAAGGCTACCTCCACAGTTATGCGATGTTCCGTTTGCCAAATAACGGCATTACCAAGCTTATTGCGGAAATTAA
CCGTGATTCATCCATTGAAACCTTGCTCGTTGGTAGTGACCACAAACCTAGAACGATCAATACCAAACAAGAAGATATCC
AAAACAGCTTAGAAATCGTGGATAAAGCGTTGGCCGGTGACACTGAAGTAGGTACTTACAGTAACCGCTTAGGTGAAGAG
ATGATTGCGGCGTTTGCGCCAATTGAAACTCGTGGCCTAACTTGGGCGCTAGTCGTGCAACTTCCTGAAAAAGAAGCCTT
TGCGCGTGTCCACCAGCTTGAAAAACTGTTTGTGATTGCGATGTTAATTGCGATCGTATTGGTAGTTATCGCCTCACATT
ACTTATCGAACTTCATCACTTCACCACTGCTAAAACTGACTTGGGCAGCAGAGAAAGTGTCTGCAGGCGATTTGGATGAA
ACGACCTTTAACACCGAACGAAAAGACGAGATTGGGCGTCTTGCGATCAGCTTTGAGCGTATGCAACGCTCTATTCGTGA
AAAGATTCAAACCATCAAGCAGCAAAATGAAGAGTTAGAAAGCAACATCAAGCTGATCCAAAAGCAAAACGAAGAATTAC
AGCTGGCTGATAAGCTGAAAGATGAGTTCCTTGCGACAACCTCCCATGAACTTCGCACGCCATTACACGGCATGGTTGGT
ATTGCAGAAACCTTGGTATCTGGCGCAAATGGGGCTATTCCGGCTAGCCAGAAATATCAATTGGACATCATCATCAAGAG
TGGTCAACGCCTAGCGAACCTCGTTGATGACTTATTGGATTACCACAAGATGCGCTATGGCAGCATGGATATCCAAAAGT
CAGCAGTGAGTCTAGCAAGTGCCACACGCTTAGTATTAGAGCTTTCCGGTCACCTATTGGGTAACAAGACTATCCGCATC
ATTAACCAAGTGCCTGCAGATTTGAAAGCTGTCTCAGCGGATCCTCAGCGCTTAGAACAAGTGCTGTACAATTTGATCGG
TAATGCCATCAAGTACACCTCTGAAGGTAAGATCGTCATTTCAGCAATGGTTGTTGACGATCAAGTTCGAGTGCAAGTCG
TGGATACAGGTCAAGGCATCCCAGCAGAGCATCTAGAACATATCTTCGAACCTCTGATTCAAGCAGGCCAAGACGCGAGC
CGCTACCGTCAAGGTGCAGGACTGGGTCTATCAATCAGCCGTCAACTTATTGAGTTGATGGGCGGGTCATTGTATGTGAG
CAGCCAACCTATGGTAGGCACCACATTCAGCTTTACCCTGCCGCTAGCAAGTGAAGAAGAGATCCAAGCGACACAAAGCC
TAGCTGCTCGCGGGCACTTCCAAATCCCTGAGGCAAATTTTGAGAACAACGATGACTTGTCTCTGCCAGAGAACCCAGAC
GGTCCATTGCTTTACGTTGCCGATGATGAACCAGTTAACCTGCGCGTTCTAGAAAGCTTCCTAAGGTTGGAAGGCTATCG
CGTTCGCACGATTTCTGATGGTCCAGAAACGCTGGCGTTAATTGAACAAGAAAAGCCAGAATTGCTTTTATTGGACATCA
TGATGCCGGGGATGAGTGGTTATCAAGTGTGCAGTGAGCTTCGTGAAACTTACGATCATGCAGAGCTACCAATCATCATG
CTAACCGCATTAAGCCAAACAGAGGACCGAGTGAGAGGCTTTGAAGCGGGCGCGAATGATTACCTGACAAAACCATTCAA
CAAACAAGAGCTAGCGGCACGTATTCAGGCGCACCTAACGGCAAGTAAAGCGGAAATGCGACACATCGAAAACAAGTTAT
TAGAGTCGGAGCTGCGCCAACGTGCAGAAGTCGAAGCGAGCTTGTTGGAGACCCAAGGGCGATTACTAGAGCAGCTAGAA
TCTGCACCAGAAGCTATTATTTGTCTTCGTGAAGACCAACGCATTCGCTTTGCTAATGAAGCGGCCTGTAAGCTGTTTAA
ACGCAGCTTAGAACAGTTGAAGCGCTCTTCAGCAGACGAATTGATCGCACCTAAGTTCTTGACGGTTAAGCAACCTCACT
ACTGTGGCAAGATTGATATCTACATTGAAGATATTCGCCAAAACATCGAAGCCGACATTCTAAAACTTCCAGAAGGCTCT
GGTTTGGATGTGATGTACATCTTTAATGTCGGCGGCGGTGCTAACGCTGCTCGTATCCACAACCTAGAGACGGCAGTTGA
AGTGCTTTCATGCTACGCATTCGATGGCGACAAAGACCAACTTCAGAAGCTAAAAGAGCTTGGTGGAGAGTTTACACGCT
TAGCAGATAAAGCTTTGGGTAACAAGAAAGACAAACAAGAGCTGCTTCGTGAGGTTCTTGTCGATACCATGACCCATGCA
TTGGAATACTGGGAGTCTGTTACCGGAGAGACCAAGTTTGCGTTTGCTGAGCAAAGTGGCTTGTGGCGTGTTTACCTAGA
CCGCAGTACCTTGCAGACTCGTACCCTCGACAAATACATGCGTATCGAGACACTACCTAAAACACCACGTTGGAGAACGG
TATTAAGCTCGATTGAGTTTATCTTGGAGCACTGTAAAGAACAGAGCCCAGAACGCGCATACATTGAAGCTCAGCGCGAC
AAAATGCAGAGACTTTTAACAAGCTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(574-683)

Response regulator receiver domain (Response_reg)

(726-836)

His Kinase A (phospho-acceptor) domain (HisKA)

(460-525)

HAMP domain (HAMP)

(375-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A812FE66

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chiS Vibrio cholerae strain A1552

76.528

100

0.766

Multiple sequence alignment