Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   A9237_RS11235 Genome accession   NZ_CP019959
Coordinates   2427533..2428051 (+) Length   172 a.a.
NCBI ID   WP_005438047.1    Uniprot ID   A0A812FIS6
Organism   Vibrio owensii strain XSBZ03     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2422533..2433051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9237_RS11225 (A9237_11225) gshA 2425248..2426816 (+) 1569 WP_005438052.1 glutamate--cysteine ligase -
  A9237_RS11230 (A9237_11230) - 2426878..2427441 (+) 564 WP_012128887.1 hypothetical protein -
  A9237_RS11235 (A9237_11235) luxS 2427533..2428051 (+) 519 WP_005438047.1 S-ribosylhomocysteine lyase Regulator
  A9237_RS11240 (A9237_11240) - 2428138..2429418 (-) 1281 WP_009707575.1 HlyC/CorC family transporter -
  A9237_RS11245 (A9237_11245) - 2429573..2430367 (-) 795 WP_005438043.1 cytochrome C assembly family protein -
  A9237_RS11250 (A9237_11250) ffh 2430581..2431969 (+) 1389 WP_005438041.1 signal recognition particle protein -
  A9237_RS11255 (A9237_11255) rpsP 2432180..2432428 (+) 249 WP_005438039.1 30S ribosomal protein S16 -
  A9237_RS11260 (A9237_11260) rimM 2432458..2433006 (+) 549 WP_005438038.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19116.87 Da        Isoelectric Point: 4.7373

>NTDB_id=219205 A9237_RS11235 WP_005438047.1 2427533..2428051(+) (luxS) [Vibrio owensii strain XSBZ03]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGESVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVENQNKIPELNEYQCGTAAMHSLDEAKQIAKNILEAGVSVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=219205 A9237_RS11235 WP_005438047.1 2427533..2428051(+) (luxS) [Vibrio owensii strain XSBZ03]
ATGCCTTTATTAGACAGTTTTACCGTAGACCACACACGCATGAATGCACCAGCAGTCCGTGTGGCTAAAACGATGCAAAC
TCCAAAAGGGGACACCATCACGGTATTCGACCTACGTTTCACTGCGCCAAACAAAGACATCCTTTCTGAGAAAGGGATTC
ATACATTAGAACACTTGTACGCAGGCTTTATGCGTAACCACTTAAATGGTGAGAGTGTTGAGATCATTGATATTTCACCA
ATGGGCTGTCGCACTGGTTTCTACATGAGTTTGATTGGCACGCCTTCAGAGCAACAAGTGGCTGACGCTTGGATTGCCGC
GATGGAAGATGTTTTGAAAGTAGAAAACCAAAACAAGATCCCTGAGTTGAACGAGTACCAATGTGGTACAGCAGCAATGC
ACTCTCTGGATGAAGCAAAGCAAATCGCGAAGAACATTCTAGAAGCCGGTGTATCAGTCAATAAGAATGACGAGCTTGCG
CTGCCAGAGTCAATGCTAAAAGAACTACGTATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A812FIS6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.135

99.419

0.866

Multiple sequence alignment