Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   LLG50_RS10285 Genome accession   NZ_CP025500
Coordinates   2097481..2098146 (+) Length   221 a.a.
NCBI ID   WP_103055145.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain G50     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2092481..2103146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLG50_RS11880 - 2092649..2093611 (-) 963 WP_234818127.1 hypothetical protein -
  LLG50_RS11885 - 2093608..2093811 (-) 204 WP_234818128.1 lactococcin 972 family bacteriocin -
  LLG50_RS10260 (LLG50_10260) - 2094248..2094976 (-) 729 WP_103055143.1 LytTR family transcriptional regulator DNA-binding domain-containing protein -
  LLG50_RS10265 (LLG50_10265) - 2095169..2095390 (+) 222 WP_010906270.1 YqgQ family protein -
  LLG50_RS10270 (LLG50_10270) - 2095425..2096396 (+) 972 WP_103055144.1 ROK family glucokinase -
  LLG50_RS10275 (LLG50_10275) - 2096399..2096785 (+) 387 WP_004254540.1 rhodanese-like domain-containing protein -
  LLG50_RS10280 (LLG50_10280) - 2096868..2097314 (-) 447 WP_004254538.1 Dps family protein -
  LLG50_RS10285 (LLG50_10285) cclA/cilC 2097481..2098146 (+) 666 WP_103055145.1 prepilin peptidase Machinery gene
  LLG50_RS10290 (LLG50_10290) dinB 2098097..2099191 (-) 1095 WP_015427123.1 DNA polymerase IV -
  LLG50_RS10295 (LLG50_10295) - 2099269..2099760 (-) 492 WP_103055146.1 prolyl-tRNA synthetase associated domain-containing protein -
  LLG50_RS10300 (LLG50_10300) - 2099839..2101332 (-) 1494 WP_015427125.1 basic amino acid/polyamine antiporter -
  LLG50_RS10305 (LLG50_10305) - 2101524..2102654 (-) 1131 WP_103055147.1 aminotransferase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25568.78 Da        Isoelectric Point: 8.8481

>NTDB_id=219205 LLG50_RS10285 WP_103055145.1 2097481..2098146(+) (cclA/cilC) [Lactococcus lactis subsp. lactis strain G50]
MDILFIFVIGSIFGSFFGLIVDRIPLRKSIIFGRSHCDSCQQLLAYRDLIPIFSQISSGSHCRYCKSKIPYLYVFLEFSS
ALIFVLAWVNYLKPSQFLLIILSLILSAFDYRQHSFPFVIWLIFALSFILIFPLSPLFYFWLILAVLAEKFNLRIGSGDF
LWFFTASFSLTFLNEMLLLQIACSLGIIYYLITKKRAEIAFIPFLTIAYLMLLLGHQILSP

Nucleotide


Download         Length: 666 bp        

>NTDB_id=219205 LLG50_RS10285 WP_103055145.1 2097481..2098146(+) (cclA/cilC) [Lactococcus lactis subsp. lactis strain G50]
ATGGACATTTTATTTATATTTGTAATTGGAAGTATTTTTGGCTCCTTTTTTGGCTTAATAGTTGACCGTATTCCACTAAG
AAAATCAATTATTTTTGGACGCTCACATTGTGATTCTTGTCAGCAACTTTTAGCCTATCGTGATCTAATTCCTATTTTTT
CTCAAATAAGCTCTGGCTCACATTGCCGTTATTGTAAAAGTAAAATTCCATATTTATATGTTTTTTTGGAGTTCTCATCA
GCTTTAATTTTTGTTTTAGCTTGGGTAAATTATCTTAAACCTAGTCAATTTTTACTGATTATTCTTTCACTAATTTTATC
TGCTTTTGATTATCGTCAGCACAGTTTTCCTTTTGTTATCTGGTTGATTTTTGCACTCAGTTTTATCTTAATATTTCCTC
TTTCTCCCCTTTTCTATTTTTGGCTTATTTTAGCCGTCTTAGCCGAAAAATTCAATTTAAGAATTGGCAGCGGTGATTTT
TTATGGTTTTTTACCGCTTCATTTTCTCTAACTTTCTTAAACGAAATGCTGCTCCTTCAAATCGCTTGTTCACTTGGTAT
CATTTATTATCTAATCACAAAAAAACGAGCTGAAATTGCCTTCATCCCGTTTCTAACTATTGCATATCTAATGTTGCTTT
TGGGACACCAAATTCTGTCACCGTAA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

36.986

99.095

0.367
  cclA/cilC Streptococcus pneumoniae Rx1

37.209

97.285

0.362
  cclA/cilC Streptococcus pneumoniae D39

37.209

97.285

0.362
  cclA/cilC Streptococcus pneumoniae R6

37.209

97.285

0.362

Multiple sequence alignment