Detailed information NTG0219202

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: A9237_RS11075
• Genome accession: NZ_CP019959
• Coordinates: 2399701..2400684 (+)
• Length: 327 a.a.
• NCBI ID: WP_009707587.1
• Uniprot ID: A0A0C1ZGB1
• Organism: Vibrio owensii strain XSBZ03
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2394701..2405684

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A9237_RS11040 (A9237_11040)	ftsB	2394710..2394991 (+)	282	WP_005436434.1	cell division protein FtsB	-
A9237_RS11045 (A9237_11045)	ispD	2394993..2395700 (+)	708	WP_078608715.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
A9237_RS11050 (A9237_11050)	ispF	2395715..2396191 (+)	477	WP_005436430.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
A9237_RS11055 (A9237_11055)	truD	2396237..2397280 (+)	1044	WP_078608182.1	tRNA pseudouridine(13) synthase TruD	-
A9237_RS11060 (A9237_11060)	surE	2397280..2398056 (+)	777	WP_005436425.1	5'/3'-nucleotidase SurE	-
A9237_RS11065 (A9237_11065)	-	2398056..2398682 (+)	627	WP_005436423.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
A9237_RS11070 (A9237_11070)	-	2398697..2399620 (+)	924	WP_005436421.1	peptidoglycan DD-metalloendopeptidase family protein	-
A9237_RS11075 (A9237_11075)	rpoS	2399701..2400684 (+)	984	WP_009707587.1	RNA polymerase sigma factor RpoS	Regulator
A9237_RS11080 (A9237_11080)	mutS	2400773..2403334 (-)	2562	WP_078608183.1	DNA mismatch repair protein MutS	-
A9237_RS11085 (A9237_11085)	pncC	2403420..2403902 (+)	483	WP_009707585.1	nicotinamide-nucleotide amidase	-
A9237_RS11090 (A9237_11090)	recA	2404103..2405146 (+)	1044	WP_005436413.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 37197.02 Da
• Isoelectric Point: 4.7200

>NTDB_id=219202 A9237_RS11075 WP_009707587.1 2399701..2400684(+) (rpoS) [Vibrio owensii strain XSBZ03]
MSISNTVTKVEEFDYDNAQSEGISNEPAKTSTGTKSAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSDP
EVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNMEN
LFNVEDD

Nucleotide

• Length: 984 bp

>NTDB_id=219202 A9237_RS11075 WP_009707587.1 2399701..2400684(+) (rpoS) [Vibrio owensii strain XSBZ03]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTCGACTACGATAATGCACAATCGGAAGGCATTTCAAACGAACC
TGCAAAAACATCTACTGGAACCAAATCAGCGGCGCGCGAAGAATTTGACGCGAGCAGTAAGAGCTTAGATGCAACACAGC
TCTACTTGGGCGAAATTGGTTTCTCACCACTACTCACTGCAGAAGAAGAAGTACTTTATGCTCGACGTGCGCTGCGTGGC
GATGAAGCTGCTCGCAAACGTATGATCGAAAGTAACTTGCGTCTTGTAGTGAAGATCTCTCGTCGATACAGTAACCGTGG
TCTTGCACTTCTTGATCTCATCGAAGAAGGTAACCTAGGTTTGATCCGTGCGGTCGAGAAGTTCGATCCAGAACGCGGTT
TCCGTTTTTCAACTTACGCGACGTGGTGGATTCGCCAAACGATCGAACGTGCGTTGATGAACCAAACTCGTACGATCCGT
CTGCCAATTCATGTGGTTAAAGAGCTGAACATTTATCTGCGTACAGCGCGTGAACTTTCTCAGAAGCTCGACCATGAACC
AACAGCGGAAGAGATCGCTGCACAGTTAGATATCCCAGTAGAAGACGTAAGTAAAATGCTTCGCCTCAACGAGCGCATCA
GTTCTGTTGACACACCAATCGGTGGTGACGGCGAGAAAGCGCTATTGGATATCATTCCTGATGCAAACAACTCGGATCCT
GAAGTTTCCACTCAGGACGATGACATCAAATCTTCATTGATCCATTGGCTAGAAGAGCTGAATCCAAAACAGAAAGAAGT
GCTGGCACGTCGTTTTGGTCTGCTTGGTTATGAGCCATCGACGCTTGAAGAAGTGGGACGTGAAATCGGACTAACGCGTG
AACGTGTTCGTCAGATCCAAGTTGAAGGTTTACGTCGACTACGCGAGATCTTGATTAAGCAAGGTTTAAACATGGAAAAC
CTGTTTAACGTTGAAGACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (168-241)

• Sigma-70, region 4 (Sigma70_r4) (256-309)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (50-83)

• Sigma-70 region 2 (Sigma70_r2) (88-157)

3D structure

• AlphaFold DB: A0A0C1ZGB1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	84.132	100	0.859