Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   LLG50_RS08865 Genome accession   NZ_CP025500
Coordinates   1819063..1819734 (-) Length   223 a.a.
NCBI ID   WP_003132782.1    Uniprot ID   Q9CET7
Organism   Lactococcus lactis subsp. lactis strain G50     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1814063..1824734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLG50_RS08840 (LLG50_08840) pheA 1814368..1815207 (-) 840 WP_014570689.1 prephenate dehydratase -
  LLG50_RS08845 (LLG50_08845) - 1815209..1815697 (-) 489 WP_015426915.1 shikimate kinase -
  LLG50_RS08850 (LLG50_08850) aroA 1815721..1817013 (-) 1293 WP_103055050.1 3-phosphoshikimate 1-carboxyvinyltransferase -
  LLG50_RS08855 (LLG50_08855) - 1817134..1818198 (-) 1065 WP_103055051.1 prephenate dehydrogenase -
  LLG50_RS08860 (LLG50_08860) - 1818201..1819076 (-) 876 WP_003132784.1 sensor histidine kinase -
  LLG50_RS08865 (LLG50_08865) braR 1819063..1819734 (-) 672 WP_003132782.1 response regulator transcription factor Regulator
  LLG50_RS08870 (LLG50_08870) - 1819737..1820801 (-) 1065 WP_017864900.1 VanZ family protein -
  LLG50_RS08875 (LLG50_08875) - 1820982..1822985 (-) 2004 WP_033899972.1 ABC transporter permease -
  LLG50_RS08880 (LLG50_08880) - 1822978..1823757 (-) 780 WP_012898329.1 ABC transporter ATP-binding protein -
  LLG50_RS11755 - 1823772..1823915 (-) 144 WP_014570691.1 hypothetical protein -
  LLG50_RS08885 (LLG50_08885) - 1823946..1824305 (-) 360 WP_010906119.1 YxeA family protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 25510.44 Da        Isoelectric Point: 4.8093

>NTDB_id=219189 LLG50_RS08865 WP_003132782.1 1819063..1819734(-) (braR) [Lactococcus lactis subsp. lactis strain G50]
MTKIFIVEDDEIIVKAIKIALEKEFQVRSVSNFRAVKQEIMEFEADLVLMDIGLPFYSGFYWTNELRKLSQIPIIFISSA
SDDMNQVTAMNQGADDFVTKPFSLEILNAKIKALLRRSYSFSGIEKLEFAGYVLSENTLISTQEGEREEIELTSSENKIL
TLLFRGNGEVVTKEKILQELWQTDEFIDANTLNVKMTRLRKKLGEIGFDKHIMTKRGSGYALV

Nucleotide


Download         Length: 672 bp        

>NTDB_id=219189 LLG50_RS08865 WP_003132782.1 1819063..1819734(-) (braR) [Lactococcus lactis subsp. lactis strain G50]
ATGACTAAAATATTTATTGTAGAAGATGATGAAATTATTGTGAAAGCAATTAAGATTGCCTTAGAAAAAGAATTTCAAGT
CAGAAGTGTTTCCAATTTTCGAGCAGTAAAACAAGAAATTATGGAATTTGAAGCAGATTTAGTATTAATGGATATTGGGC
TACCATTTTATAGTGGTTTTTATTGGACAAATGAATTAAGAAAGCTTTCCCAAATTCCTATTATCTTTATTTCTTCGGCA
TCGGATGACATGAATCAAGTAACCGCTATGAATCAAGGAGCTGATGATTTTGTAACCAAGCCATTTTCATTAGAAATTTT
AAATGCAAAAATAAAAGCTTTACTGCGCAGAAGTTATTCTTTTTCAGGGATTGAAAAATTAGAATTTGCTGGTTATGTTT
TATCTGAAAATACTTTGATTTCAACTCAAGAAGGTGAACGCGAAGAAATTGAGCTAACAAGTTCTGAAAATAAAATTTTA
ACTCTTCTTTTTCGTGGAAATGGTGAAGTGGTGACCAAGGAAAAAATTCTACAAGAGTTGTGGCAAACAGATGAATTTAT
TGATGCAAATACTTTAAATGTAAAAATGACTCGTTTACGCAAAAAACTTGGTGAAATTGGCTTTGATAAGCATATTATGA
CAAAAAGAGGAAGTGGTTATGCTCTGGTTTAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(148-222)

Response regulator receiver domain (Response_reg)

(4-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CET7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.441

99.552

0.413