Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LLG50_RS04305 Genome accession   NZ_CP025500
Coordinates   870627..872294 (+) Length   555 a.a.
NCBI ID   WP_103054639.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain G50     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 865627..877294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLG50_RS04280 (LLG50_04280) - 866683..866922 (+) 240 WP_003131346.1 exodeoxyribonuclease VII small subunit -
  LLG50_RS04285 (LLG50_04285) - 867071..868228 (+) 1158 WP_103054638.1 glycerate kinase -
  LLG50_RS04290 (LLG50_04290) - 868310..869167 (+) 858 WP_058203918.1 polyprenyl synthetase family protein -
  LLG50_RS04295 (LLG50_04295) - 869247..870053 (+) 807 WP_015426159.1 TlyA family RNA methyltransferase -
  LLG50_RS04300 (LLG50_04300) - 870050..870496 (+) 447 WP_015426160.1 arginine repressor -
  LLG50_RS04305 (LLG50_04305) recN 870627..872294 (+) 1668 WP_103054639.1 DNA repair protein RecN Machinery gene
  LLG50_RS04315 (LLG50_04315) - 873019..873585 (+) 567 WP_003131353.1 TMEM175 family protein -
  LLG50_RS04320 (LLG50_04320) - 873683..874204 (+) 522 WP_003131354.1 DUF805 domain-containing protein -
  LLG50_RS04325 (LLG50_04325) - 874228..875166 (+) 939 WP_103054640.1 DUF805 domain-containing protein -
  LLG50_RS04330 (LLG50_04330) rsmH 875386..876339 (+) 954 WP_081037498.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  LLG50_RS04335 (LLG50_04335) ftsL2 876497..876877 (+) 381 WP_003131357.1 cell division protein FtsL -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 62852.15 Da        Isoelectric Point: 4.7062

>NTDB_id=219162 LLG50_RS04305 WP_103054639.1 870627..872294(+) (recN) [Lactococcus lactis subsp. lactis strain G50]
MLQEISIKNFAIIEEIHLSFESGMTILTGETGAGKSIIIDAMSLLLGGRASSDFVRHGANKAEIEGLFFFDKTPELKAVL
LELGFEEVDSEIILRREIFANGRSVCRINGQMVNLATLRRVGELLVDIHGQHDSQELMNPKSHLRLLDEFGDEAFDQIKN
KYKLKFENFKNLRQQLNLRQKNEQEFAQRIEILQFQAEEIEAAEINLEEDEQLINRREKLNNIKNIADSLSSAYLALDDE
DNDYSSLNNIRTTMTELDKISNFDNDYQELADKTAESYYVLEEVANQIQRIMSDLEFNPAELLQIEDRIMTLTTLKKKYG
PELSDVMNYLEKVQLELSELTGSENDSENLENSVKVAQVQLIEASKKLNEARHKIAKEVEKDIKHELSELYMEKADFKVS
FEGAKFSANGNEHVEFFIQTNPGEGFKPLAKTASGGELSRLMLAIKSSFSRRENKTAIVFDEVDTGVSGRVAQAIANKIY
KIARHGQVLAISHLPQVVAIADRQFYIEKASTDDITTSTVRKLNAEERVNEIAKMLAGEDLTKEALAQAKRLLSK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=219162 LLG50_RS04305 WP_103054639.1 870627..872294(+) (recN) [Lactococcus lactis subsp. lactis strain G50]
ATGTTACAAGAGATTTCAATCAAAAATTTTGCAATTATTGAAGAAATTCATCTATCCTTTGAGAGTGGAATGACGATTTT
AACTGGGGAAACTGGTGCGGGAAAATCAATAATTATTGATGCAATGTCTTTATTATTAGGTGGGCGTGCTTCGAGTGATT
TTGTGCGGCATGGGGCAAACAAAGCCGAAATAGAAGGTCTCTTTTTCTTTGATAAAACTCCAGAATTGAAGGCGGTATTA
TTAGAACTTGGCTTTGAAGAAGTAGATTCTGAAATTATTTTAAGACGTGAGATTTTTGCTAATGGTCGTTCCGTTTGTCG
AATCAATGGTCAAATGGTTAATTTAGCTACGCTAAGACGAGTGGGTGAATTATTAGTTGATATTCATGGTCAACACGATA
GCCAAGAATTGATGAATCCGAAAAGCCATCTTCGTTTACTTGATGAATTTGGTGACGAAGCCTTTGATCAGATAAAAAAT
AAGTACAAACTCAAATTTGAAAACTTCAAAAATTTGCGTCAACAGCTCAATTTACGACAAAAAAATGAGCAAGAATTTGC
TCAAAGAATTGAAATTCTTCAATTTCAGGCTGAAGAAATTGAAGCGGCGGAAATTAATCTTGAAGAAGATGAACAATTAA
TTAATCGCCGAGAAAAGTTAAATAATATTAAAAATATTGCTGATTCGCTTAGTAGTGCTTATCTAGCGCTTGATGATGAA
GATAATGATTATTCAAGTCTTAATAATATCCGAACAACAATGACAGAATTGGATAAAATTAGTAACTTTGATAATGACTA
TCAAGAGCTTGCTGACAAGACAGCTGAAAGTTATTATGTATTAGAAGAAGTTGCTAATCAAATTCAAAGAATCATGAGTG
ATTTAGAATTTAATCCCGCGGAGCTTTTACAAATTGAAGACCGGATTATGACCTTGACCACTTTGAAGAAAAAATATGGC
CCAGAACTGTCCGATGTGATGAACTATTTAGAGAAAGTCCAACTTGAACTCTCAGAACTGACGGGTTCAGAAAATGACTC
AGAAAATCTAGAAAATTCAGTTAAAGTTGCACAAGTTCAACTCATTGAAGCAAGTAAAAAACTTAATGAAGCGCGCCATA
AAATTGCCAAAGAAGTTGAAAAAGATATTAAACACGAACTTTCTGAGCTTTATATGGAAAAAGCTGATTTCAAAGTTAGT
TTTGAAGGGGCAAAATTTTCAGCAAACGGGAATGAGCATGTTGAATTCTTTATTCAAACCAATCCGGGAGAAGGATTTAA
ACCGCTGGCAAAAACAGCTTCGGGTGGTGAACTTTCACGTTTAATGCTCGCTATAAAATCAAGCTTTTCAAGACGTGAAA
ATAAAACAGCCATTGTTTTTGATGAGGTCGATACTGGTGTTTCTGGCCGTGTTGCTCAAGCGATTGCTAATAAAATATAT
AAAATTGCTAGACATGGGCAAGTTCTTGCAATTTCTCACCTTCCGCAAGTTGTGGCCATTGCCGACAGACAATTTTATAT
TGAAAAAGCTTCAACCGATGACATTACTACTTCCACAGTTAGAAAATTAAACGCTGAAGAAAGAGTAAATGAAATTGCGA
AAATGCTTGCTGGTGAAGATTTAACTAAAGAAGCCTTAGCTCAGGCTAAACGTTTATTGAGCAAATAA

Domains

Predicted by InterProScan.

AAA domain (AAA_23)

(4-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.182

100

0.445