Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | PG_RS04955 | Genome accession | NC_002950 |
| Coordinates | 1192173..1194764 (-) | Length | 863 a.a. |
| NCBI ID | WP_004584414.1 | Uniprot ID | Q7MVE7 |
| Organism | Porphyromonas gingivalis W83 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1187173..1199764
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PG_RS04935 (PG1114) | panD | 1187177..1187533 (+) | 357 | WP_010956218.1 | aspartate 1-decarboxylase | - |
| PG_RS04940 (PG1115) | ffh | 1187610..1188947 (+) | 1338 | WP_004584418.1 | signal recognition particle protein | - |
| PG_RS04945 (PG1116) | folD | 1189071..1189961 (+) | 891 | WP_004584417.1 | bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD | - |
| PG_RS04950 (PG1117) | - | 1190255..1191601 (+) | 1347 | WP_043876432.1 | MATE family efflux transporter | - |
| PG_RS04955 (PG1118) | clpC | 1192173..1194764 (-) | 2592 | WP_004584414.1 | ATP-dependent chaperone ClpB | Regulator |
| PG_RS04960 (PG1119) | - | 1194983..1195543 (+) | 561 | WP_005873686.1 | flavodoxin | - |
| PG_RS04965 (PG1121) | asnS | 1196236..1197645 (-) | 1410 | WP_005873704.1 | asparagine--tRNA ligase | - |
| PG_RS04970 | - | 1197677..1198996 (-) | 1320 | WP_005873702.1 | pseudouridine synthase | - |
Sequence
Protein
Download Length: 863 a.a. Molecular weight: 97766.38 Da Isoelectric Point: 5.1439
>NTDB_id=21916 PG_RS04955 WP_004584414.1 1192173..1194764(-) (clpC) [Porphyromonas gingivalis W83]
MNINNYTIKSQEALQQAVELTRRHGQQAIEPQHLLKAVMDQGESLTDFLFAKMGLNKGSIATAVDKLIEKLPHVSGGEPY
LSHETNQVLQAAEDAAHRMKDKYVSLEHIVLAILTTRCEASTLLKDAGATEQLLQSAIEELRKGRNVTSQSAEEQYNALE
KYAVNLCQRARDGKLDPVIGRDDEIRRVLQILSRRTKNNPILIGEPGVGKTAIAEGLAYRIVRGDVPENLRNKQIFSLDM
GALIAGAKYKGEFEERLKAVVNEVTGAEGEIILFIDEIHTLVGAGKSEGAMDAANILKPALARGELRAIGATTLDEYRKY
FEKDKALERRFQMVMVDEPDELSSISILRGLKEKYENHHKVRIKDDAIIAAVKLSHRYITERFLPDKAIDLMDEAAARLR
MEVDSLPEELDEISRRIKQLEIEREAIKRENDEEKVQFLDREIAELKEKEASEKAQWQNEKDRINQIQQLKIDIEELKFQ
ADRAEREGDYGRVAEIRYGLIKQKETEIDTIQQQLHELQRGGSMIKEEVEADDIADIVSRWTGIPVSRMLQSERDKLLHL
EDELHKRVIGQDEAIRAVADAVRRSRAGLQDPKRPIGSFIFLGTTGVGKTELARALAELLFDDESMLTRIDMSEYQEKFS
ATRLIGAPPGYVGYDEGGQLTEAIRRKPYSVVLFDEIEKAHPDVFNVLLQVLDDGRLTDNKGHVVNFKNTLIIMTSNLGS
DIIRERMQNLTAENRRSLTARTADEVMQLLKHTIRPEFLNRIDETIVFTPLTEKEIYEIVRLQLDGIVRQLADNDVVLHY
TEAVVTFAAREGYDPQFGARPVKRVLQRFVLNELSKALLADTVDSTRPVLIDCIDGSIVFRNE
MNINNYTIKSQEALQQAVELTRRHGQQAIEPQHLLKAVMDQGESLTDFLFAKMGLNKGSIATAVDKLIEKLPHVSGGEPY
LSHETNQVLQAAEDAAHRMKDKYVSLEHIVLAILTTRCEASTLLKDAGATEQLLQSAIEELRKGRNVTSQSAEEQYNALE
KYAVNLCQRARDGKLDPVIGRDDEIRRVLQILSRRTKNNPILIGEPGVGKTAIAEGLAYRIVRGDVPENLRNKQIFSLDM
GALIAGAKYKGEFEERLKAVVNEVTGAEGEIILFIDEIHTLVGAGKSEGAMDAANILKPALARGELRAIGATTLDEYRKY
FEKDKALERRFQMVMVDEPDELSSISILRGLKEKYENHHKVRIKDDAIIAAVKLSHRYITERFLPDKAIDLMDEAAARLR
MEVDSLPEELDEISRRIKQLEIEREAIKRENDEEKVQFLDREIAELKEKEASEKAQWQNEKDRINQIQQLKIDIEELKFQ
ADRAEREGDYGRVAEIRYGLIKQKETEIDTIQQQLHELQRGGSMIKEEVEADDIADIVSRWTGIPVSRMLQSERDKLLHL
EDELHKRVIGQDEAIRAVADAVRRSRAGLQDPKRPIGSFIFLGTTGVGKTELARALAELLFDDESMLTRIDMSEYQEKFS
ATRLIGAPPGYVGYDEGGQLTEAIRRKPYSVVLFDEIEKAHPDVFNVLLQVLDDGRLTDNKGHVVNFKNTLIIMTSNLGS
DIIRERMQNLTAENRRSLTARTADEVMQLLKHTIRPEFLNRIDETIVFTPLTEKEIYEIVRLQLDGIVRQLADNDVVLHY
TEAVVTFAAREGYDPQFGARPVKRVLQRFVLNELSKALLADTVDSTRPVLIDCIDGSIVFRNE
Nucleotide
Download Length: 2592 bp
>NTDB_id=21916 PG_RS04955 WP_004584414.1 1192173..1194764(-) (clpC) [Porphyromonas gingivalis W83]
ATGAACATTAACAACTACACAATCAAATCGCAGGAGGCTCTACAGCAGGCTGTGGAGCTGACCCGTCGGCACGGACAGCA
GGCCATCGAACCGCAGCACCTGCTCAAGGCCGTTATGGATCAGGGCGAAAGCCTGACCGATTTCCTTTTTGCCAAGATGG
GGCTGAACAAGGGCAGTATCGCCACGGCTGTGGACAAACTGATAGAGAAACTGCCCCATGTATCGGGTGGCGAACCCTAT
CTGTCGCATGAGACCAATCAGGTGCTACAGGCAGCGGAGGACGCAGCGCACCGGATGAAGGACAAATACGTCTCTTTGGA
GCACATCGTGCTGGCTATTCTGACTACGCGATGCGAGGCGTCCACTCTGCTCAAGGATGCCGGAGCCACCGAACAGCTTC
TGCAGTCGGCCATCGAAGAGCTTCGGAAGGGGCGCAACGTGACCAGTCAGAGTGCGGAGGAACAGTACAATGCACTGGAG
AAATATGCCGTCAATCTCTGTCAGCGTGCTCGCGATGGCAAGTTGGATCCCGTGATCGGTCGCGATGACGAGATCAGGCG
AGTGCTGCAAATTCTCTCTCGACGCACCAAGAACAATCCTATCCTTATCGGTGAGCCGGGGGTGGGCAAGACGGCCATAG
CCGAGGGCTTGGCTTACAGGATCGTGCGTGGCGACGTGCCGGAGAATCTGCGCAACAAGCAGATATTCTCTCTCGACATG
GGTGCCTTGATCGCCGGAGCCAAATACAAAGGTGAATTCGAGGAAAGGCTGAAAGCCGTGGTAAACGAAGTGACCGGTGC
CGAGGGGGAAATCATCCTTTTCATAGATGAGATCCACACCCTTGTCGGAGCCGGCAAGAGCGAAGGCGCGATGGACGCTG
CCAACATACTGAAGCCGGCCCTGGCTCGGGGCGAACTCCGTGCCATCGGTGCCACCACGCTGGACGAATACCGCAAATAC
TTCGAGAAGGACAAGGCTCTGGAACGACGCTTCCAGATGGTGATGGTGGACGAGCCGGACGAGCTAAGCTCCATCTCCAT
CCTCCGGGGTTTGAAGGAGAAATACGAGAATCACCACAAAGTGCGGATCAAGGATGATGCCATCATTGCGGCCGTGAAGT
TGTCGCACCGCTACATTACGGAGCGGTTCCTGCCCGACAAGGCCATCGACCTGATGGATGAGGCTGCGGCTCGTCTGCGT
ATGGAAGTGGATTCGCTGCCGGAGGAGCTGGACGAGATCTCGCGCAGGATCAAGCAACTTGAGATCGAACGCGAAGCCAT
CAAGCGAGAGAATGACGAAGAGAAGGTACAGTTCCTCGACAGGGAAATAGCCGAACTCAAGGAGAAAGAGGCCTCGGAGA
AAGCCCAATGGCAGAACGAAAAAGATCGGATCAATCAGATTCAGCAGCTCAAGATAGATATAGAGGAGCTGAAGTTTCAG
GCCGATCGTGCCGAACGGGAGGGCGATTACGGACGAGTGGCCGAGATACGCTACGGACTCATCAAGCAGAAAGAGACGGA
GATCGACACGATACAGCAGCAGCTGCACGAATTGCAGCGTGGCGGCTCCATGATCAAGGAGGAAGTGGAGGCCGACGACA
TAGCCGACATCGTGTCGCGCTGGACGGGTATCCCCGTCAGCCGCATGCTCCAGAGCGAGCGCGACAAGCTGCTTCATCTG
GAGGACGAGCTGCACAAGCGCGTGATCGGTCAGGACGAAGCCATCCGTGCCGTGGCCGATGCCGTCCGTCGCAGCCGGGC
AGGCCTTCAGGATCCCAAGCGTCCGATCGGTTCGTTCATCTTCCTCGGTACTACGGGGGTGGGCAAGACGGAGTTGGCAC
GTGCCTTGGCCGAATTGCTCTTCGATGATGAGAGCATGCTTACGCGAATAGACATGAGCGAGTATCAGGAGAAGTTCAGT
GCCACGCGTCTGATCGGTGCGCCTCCGGGGTATGTGGGCTATGACGAGGGTGGCCAATTGACGGAAGCCATTCGCCGCAA
GCCTTATTCCGTGGTGCTTTTCGATGAAATAGAAAAAGCTCACCCGGATGTGTTCAACGTATTGCTGCAAGTCCTCGACG
ATGGCCGCCTGACCGACAACAAGGGGCATGTGGTAAACTTCAAGAATACGCTCATCATCATGACGTCGAACCTCGGTTCG
GACATCATTCGCGAGCGGATGCAGAACCTCACGGCGGAGAATCGCCGGTCCCTCACGGCCCGGACGGCCGATGAGGTGAT
GCAGCTACTCAAGCATACGATCCGCCCCGAGTTTCTGAACCGTATCGACGAGACCATCGTCTTCACGCCACTGACCGAGA
AGGAGATCTACGAGATCGTCCGCTTGCAGCTCGATGGTATCGTGCGCCAACTGGCCGATAACGACGTGGTGCTCCACTAT
ACGGAGGCTGTCGTGACCTTTGCCGCTCGCGAGGGATATGATCCGCAGTTCGGAGCGCGTCCTGTGAAGCGAGTCCTGCA
GCGATTCGTCCTCAACGAGCTGAGCAAGGCACTCTTGGCCGATACGGTGGACAGTACACGTCCCGTCCTCATCGATTGCA
TAGACGGATCAATCGTCTTCCGCAACGAATAG
ATGAACATTAACAACTACACAATCAAATCGCAGGAGGCTCTACAGCAGGCTGTGGAGCTGACCCGTCGGCACGGACAGCA
GGCCATCGAACCGCAGCACCTGCTCAAGGCCGTTATGGATCAGGGCGAAAGCCTGACCGATTTCCTTTTTGCCAAGATGG
GGCTGAACAAGGGCAGTATCGCCACGGCTGTGGACAAACTGATAGAGAAACTGCCCCATGTATCGGGTGGCGAACCCTAT
CTGTCGCATGAGACCAATCAGGTGCTACAGGCAGCGGAGGACGCAGCGCACCGGATGAAGGACAAATACGTCTCTTTGGA
GCACATCGTGCTGGCTATTCTGACTACGCGATGCGAGGCGTCCACTCTGCTCAAGGATGCCGGAGCCACCGAACAGCTTC
TGCAGTCGGCCATCGAAGAGCTTCGGAAGGGGCGCAACGTGACCAGTCAGAGTGCGGAGGAACAGTACAATGCACTGGAG
AAATATGCCGTCAATCTCTGTCAGCGTGCTCGCGATGGCAAGTTGGATCCCGTGATCGGTCGCGATGACGAGATCAGGCG
AGTGCTGCAAATTCTCTCTCGACGCACCAAGAACAATCCTATCCTTATCGGTGAGCCGGGGGTGGGCAAGACGGCCATAG
CCGAGGGCTTGGCTTACAGGATCGTGCGTGGCGACGTGCCGGAGAATCTGCGCAACAAGCAGATATTCTCTCTCGACATG
GGTGCCTTGATCGCCGGAGCCAAATACAAAGGTGAATTCGAGGAAAGGCTGAAAGCCGTGGTAAACGAAGTGACCGGTGC
CGAGGGGGAAATCATCCTTTTCATAGATGAGATCCACACCCTTGTCGGAGCCGGCAAGAGCGAAGGCGCGATGGACGCTG
CCAACATACTGAAGCCGGCCCTGGCTCGGGGCGAACTCCGTGCCATCGGTGCCACCACGCTGGACGAATACCGCAAATAC
TTCGAGAAGGACAAGGCTCTGGAACGACGCTTCCAGATGGTGATGGTGGACGAGCCGGACGAGCTAAGCTCCATCTCCAT
CCTCCGGGGTTTGAAGGAGAAATACGAGAATCACCACAAAGTGCGGATCAAGGATGATGCCATCATTGCGGCCGTGAAGT
TGTCGCACCGCTACATTACGGAGCGGTTCCTGCCCGACAAGGCCATCGACCTGATGGATGAGGCTGCGGCTCGTCTGCGT
ATGGAAGTGGATTCGCTGCCGGAGGAGCTGGACGAGATCTCGCGCAGGATCAAGCAACTTGAGATCGAACGCGAAGCCAT
CAAGCGAGAGAATGACGAAGAGAAGGTACAGTTCCTCGACAGGGAAATAGCCGAACTCAAGGAGAAAGAGGCCTCGGAGA
AAGCCCAATGGCAGAACGAAAAAGATCGGATCAATCAGATTCAGCAGCTCAAGATAGATATAGAGGAGCTGAAGTTTCAG
GCCGATCGTGCCGAACGGGAGGGCGATTACGGACGAGTGGCCGAGATACGCTACGGACTCATCAAGCAGAAAGAGACGGA
GATCGACACGATACAGCAGCAGCTGCACGAATTGCAGCGTGGCGGCTCCATGATCAAGGAGGAAGTGGAGGCCGACGACA
TAGCCGACATCGTGTCGCGCTGGACGGGTATCCCCGTCAGCCGCATGCTCCAGAGCGAGCGCGACAAGCTGCTTCATCTG
GAGGACGAGCTGCACAAGCGCGTGATCGGTCAGGACGAAGCCATCCGTGCCGTGGCCGATGCCGTCCGTCGCAGCCGGGC
AGGCCTTCAGGATCCCAAGCGTCCGATCGGTTCGTTCATCTTCCTCGGTACTACGGGGGTGGGCAAGACGGAGTTGGCAC
GTGCCTTGGCCGAATTGCTCTTCGATGATGAGAGCATGCTTACGCGAATAGACATGAGCGAGTATCAGGAGAAGTTCAGT
GCCACGCGTCTGATCGGTGCGCCTCCGGGGTATGTGGGCTATGACGAGGGTGGCCAATTGACGGAAGCCATTCGCCGCAA
GCCTTATTCCGTGGTGCTTTTCGATGAAATAGAAAAAGCTCACCCGGATGTGTTCAACGTATTGCTGCAAGTCCTCGACG
ATGGCCGCCTGACCGACAACAAGGGGCATGTGGTAAACTTCAAGAATACGCTCATCATCATGACGTCGAACCTCGGTTCG
GACATCATTCGCGAGCGGATGCAGAACCTCACGGCGGAGAATCGCCGGTCCCTCACGGCCCGGACGGCCGATGAGGTGAT
GCAGCTACTCAAGCATACGATCCGCCCCGAGTTTCTGAACCGTATCGACGAGACCATCGTCTTCACGCCACTGACCGAGA
AGGAGATCTACGAGATCGTCCGCTTGCAGCTCGATGGTATCGTGCGCCAACTGGCCGATAACGACGTGGTGCTCCACTAT
ACGGAGGCTGTCGTGACCTTTGCCGCTCGCGAGGGATATGATCCGCAGTTCGGAGCGCGTCCTGTGAAGCGAGTCCTGCA
GCGATTCGTCCTCAACGAGCTGAGCAAGGCACTCTTGGCCGATACGGTGGACAGTACACGTCCCGTCCTCATCGATTGCA
TAGACGGATCAATCGTCTTCCGCAACGAATAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
46.49 |
100 |
0.468 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
41.371 |
100 |
0.419 |
| clpC | Streptococcus pneumoniae TIGR4 |
38.265 |
100 |
0.399 |
| clpC | Streptococcus pneumoniae Rx1 |
38.952 |
100 |
0.396 |
| clpC | Streptococcus pneumoniae D39 |
38.952 |
100 |
0.396 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
43.568 |
83.778 |
0.365 |
| clpE | Streptococcus pneumoniae Rx1 |
44.556 |
80.881 |
0.36 |
| clpE | Streptococcus pneumoniae D39 |
44.556 |
80.881 |
0.36 |
| clpE | Streptococcus pneumoniae R6 |
44.556 |
80.881 |
0.36 |
| clpE | Streptococcus pneumoniae TIGR4 |
44.556 |
80.881 |
0.36 |