Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   LLG50_RS02185 Genome accession   NZ_CP025500
Coordinates   441038..441754 (-) Length   238 a.a.
NCBI ID   WP_021466934.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain G50     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 436038..446754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLG50_RS02170 (LLG50_02170) cdaA 437730..438608 (+) 879 WP_003131542.1 diadenylate cyclase CdaA -
  LLG50_RS02175 (LLG50_02175) - 438598..439557 (+) 960 WP_012897245.1 YbbR-like domain-containing protein -
  LLG50_RS02180 (LLG50_02180) glmM 439603..440961 (+) 1359 WP_003131539.1 phosphoglucosamine mutase -
  LLG50_RS02185 (LLG50_02185) treR 441038..441754 (-) 717 WP_021466934.1 trehalose operon repressor Regulator
  LLG50_RS02190 (LLG50_02190) - 441865..442350 (+) 486 WP_015425865.1 PTS sugar transporter subunit IIA -
  LLG50_RS02195 (LLG50_02195) - 442487..444052 (+) 1566 WP_201261406.1 PTS transporter subunit EIIC -
  LLG50_RS02200 (LLG50_02200) - 444120..446429 (+) 2310 WP_058208678.1 glycoside hydrolase family 65 protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27906.57 Da        Isoelectric Point: 6.4168

>NTDB_id=219154 LLG50_RS02185 WP_021466934.1 441038..441754(-) (treR) [Lactococcus lactis subsp. lactis strain G50]
MKKYEVILQDLEKKIFNDIYKTNDILPSENELSVNYESSRSTVRQALKILEEKGLIQRRHGYGSIVLAHDRLLFPISGLT
SYKELQTSMGFHSETEVIRFERLEINPKLSETTGFAVGEHAISILRRRKVDGKFSILDWDLFLEKYSEGLTPEHAKISTY
DYLEDNLGLDIAYAQKEVTIDFACEDDFKYLDLNPKDHHVVSVKSHVYLADNTLFQYTESRHQVDRFRFTEFARRQKR

Nucleotide


Download         Length: 717 bp        

>NTDB_id=219154 LLG50_RS02185 WP_021466934.1 441038..441754(-) (treR) [Lactococcus lactis subsp. lactis strain G50]
ATGAAGAAATATGAAGTGATTTTGCAAGATTTAGAAAAAAAGATTTTTAACGATATCTATAAAACGAACGATATTCTTCC
AAGTGAAAATGAGCTCTCTGTTAATTACGAGAGCAGTCGTTCAACAGTCAGACAGGCTTTAAAAATTTTAGAAGAGAAAG
GGCTTATTCAAAGACGACATGGCTATGGTAGCATTGTCCTCGCTCATGATAGGCTCCTTTTCCCTATCTCTGGCTTAACT
TCATACAAAGAACTACAAACCTCTATGGGTTTCCATAGTGAAACTGAGGTCATTCGCTTTGAAAGACTTGAAATTAACCC
TAAACTTTCAGAAACAACTGGTTTTGCCGTTGGGGAACACGCCATAAGTATTCTCAGAAGGCGCAAAGTAGATGGCAAAT
TTTCAATTTTAGATTGGGATTTATTTTTAGAAAAATATTCCGAAGGTTTAACTCCAGAACATGCTAAAATTTCAACCTAT
GACTACTTAGAAGATAATTTAGGGCTTGACATTGCCTATGCTCAAAAGGAAGTCACGATTGATTTTGCTTGCGAAGATGA
CTTTAAATACCTTGACTTAAACCCCAAAGACCATCATGTCGTGTCTGTCAAATCTCATGTTTATCTTGCTGATAATACTC
TTTTTCAGTATACTGAATCTCGACATCAAGTCGACCGCTTTCGTTTCACAGAATTCGCTAGACGACAAAAAAGATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(4-66)

UTRA domain (UTRA)

(89-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

46.414

99.58

0.462

Multiple sequence alignment