Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   B2H83_RS05705 Genome accession   NZ_CP019953
Coordinates   1196632..1197261 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli M8     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1191632..1202261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B2H83_RS05685 (B2H83_06030) ycbZ 1192022..1193782 (-) 1761 WP_129541776.1 Lon protease family protein -
  B2H83_RS05690 (B2H83_06035) matP 1193968..1194420 (+) 453 WP_000877158.1 macrodomain Ter protein MatP -
  B2H83_RS05695 (B2H83_06040) ompA 1194495..1195547 (-) 1053 WP_129541777.1 porin OmpA -
  B2H83_RS05700 (B2H83_06050) sulA 1195904..1196413 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  B2H83_RS05705 (B2H83_06055) sxy/tfoX 1196632..1197261 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  B2H83_RS05710 (B2H83_06060) yccS 1197224..1199386 (-) 2163 WP_000875044.1 YccS family putative transporter -
  B2H83_RS05715 (B2H83_06065) yccF 1199396..1199842 (-) 447 WP_001261235.1 YccF domain-containing protein -
  B2H83_RS05720 (B2H83_06070) helD 1199965..1202019 (+) 2055 WP_129541778.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=219135 B2H83_RS05705 WP_000839153.1 1196632..1197261(+) (sxy/tfoX) [Escherichia coli M8]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=219135 B2H83_RS05705 WP_000839153.1 1196632..1197261(+) (sxy/tfoX) [Escherichia coli M8]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment