Detailed information
Bioinformatically predicted
Overview
| Name | exbB | Type | Machinery gene |
| Locus tag | B2D37_RS04865 | Genome accession | NZ_CP019947 |
| Coordinates | 1042706..1043338 (+) | Length | 210 a.a. |
| NCBI ID | WP_079201657.1 | Uniprot ID | - |
| Organism | Pseudomonas sp. CC6-YY-74 | ||
| Function | ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1037706..1048338
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B2D37_RS04850 | - | 1038371..1039615 (+) | 1245 | WP_079201655.1 | lipoprotein-releasing ABC transporter permease subunit | - |
| B2D37_RS04855 | - | 1039735..1040268 (-) | 534 | WP_079201656.1 | DUF2062 domain-containing protein | - |
| B2D37_RS04860 | - | 1040409..1042633 (+) | 2225 | Protein_958 | DNA internalization-related competence protein ComEC/Rec2 | - |
| B2D37_RS04865 | exbB | 1042706..1043338 (+) | 633 | WP_079201657.1 | MotA/TolQ/ExbB proton channel family protein | Machinery gene |
| B2D37_RS04870 | - | 1043335..1043763 (+) | 429 | WP_079201658.1 | biopolymer transporter ExbD | - |
| B2D37_RS04875 | lpxK | 1043777..1044781 (+) | 1005 | WP_079201659.1 | tetraacyldisaccharide 4'-kinase | - |
| B2D37_RS04880 | - | 1044844..1045029 (+) | 186 | WP_079201660.1 | Trm112 family protein | - |
| B2D37_RS04885 | kdsB | 1045030..1045794 (+) | 765 | WP_079201661.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| B2D37_RS04890 | - | 1045794..1046258 (+) | 465 | WP_079201662.1 | low molecular weight protein-tyrosine-phosphatase | - |
| B2D37_RS04895 | murB | 1046255..1047274 (+) | 1020 | WP_079201663.1 | UDP-N-acetylmuramate dehydrogenase | - |
Sequence
Protein
Download Length: 210 a.a. Molecular weight: 22879.11 Da Isoelectric Point: 9.1451
>NTDB_id=219077 B2D37_RS04865 WP_079201657.1 1042706..1043338(+) (exbB) [Pseudomonas sp. CC6-YY-74]
MWELVKAGGWMMLPIMLCSIAAAGIIAERLWTLRPSRITPPHLLGQVWRWIKDKKLNNQKLKELRANSPLGQILAAGLAN
SKHGREIMKECIQEAAARVIHDLERYLNALGTIAGIAPLLGLLGTVLGMIEIFSSFMGSGMANAALLAAGISTALITTAA
GLMVAIPALFFHRYLQRRVDELVVGMEQEAIKLVEVVQGDRDVDFAEGRA
MWELVKAGGWMMLPIMLCSIAAAGIIAERLWTLRPSRITPPHLLGQVWRWIKDKKLNNQKLKELRANSPLGQILAAGLAN
SKHGREIMKECIQEAAARVIHDLERYLNALGTIAGIAPLLGLLGTVLGMIEIFSSFMGSGMANAALLAAGISTALITTAA
GLMVAIPALFFHRYLQRRVDELVVGMEQEAIKLVEVVQGDRDVDFAEGRA
Nucleotide
Download Length: 633 bp
>NTDB_id=219077 B2D37_RS04865 WP_079201657.1 1042706..1043338(+) (exbB) [Pseudomonas sp. CC6-YY-74]
GTGTGGGAACTGGTTAAAGCTGGCGGCTGGATGATGCTGCCCATAATGCTGTGCTCTATTGCTGCGGCCGGCATTATTGC
CGAGCGTCTGTGGACGCTGCGGCCCAGCCGCATCACCCCGCCACACCTGCTCGGTCAGGTCTGGCGCTGGATCAAGGATA
AAAAGCTGAATAACCAGAAACTCAAGGAGCTGCGTGCCAACTCGCCCTTGGGGCAGATTCTGGCTGCCGGCCTGGCCAAT
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCCAAGAGGCCGCCGCGCGGGTTATCCACGATCTGGAGCGCTATCT
CAATGCCCTGGGCACCATCGCCGGTATCGCGCCGCTGCTCGGTTTGCTCGGTACCGTGTTGGGTATGATCGAGATCTTCA
GCTCCTTCATGGGCTCGGGCATGGCCAATGCGGCGCTGCTCGCAGCAGGTATTTCCACGGCATTGATCACCACTGCGGCC
GGGTTGATGGTGGCCATTCCAGCCTTGTTCTTTCACCGCTATCTGCAACGGCGGGTCGATGAGCTGGTGGTCGGCATGGA
GCAGGAAGCGATCAAGCTGGTGGAAGTAGTGCAAGGTGATCGTGACGTCGATTTTGCTGAGGGCAGGGCGTGA
GTGTGGGAACTGGTTAAAGCTGGCGGCTGGATGATGCTGCCCATAATGCTGTGCTCTATTGCTGCGGCCGGCATTATTGC
CGAGCGTCTGTGGACGCTGCGGCCCAGCCGCATCACCCCGCCACACCTGCTCGGTCAGGTCTGGCGCTGGATCAAGGATA
AAAAGCTGAATAACCAGAAACTCAAGGAGCTGCGTGCCAACTCGCCCTTGGGGCAGATTCTGGCTGCCGGCCTGGCCAAT
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCCAAGAGGCCGCCGCGCGGGTTATCCACGATCTGGAGCGCTATCT
CAATGCCCTGGGCACCATCGCCGGTATCGCGCCGCTGCTCGGTTTGCTCGGTACCGTGTTGGGTATGATCGAGATCTTCA
GCTCCTTCATGGGCTCGGGCATGGCCAATGCGGCGCTGCTCGCAGCAGGTATTTCCACGGCATTGATCACCACTGCGGCC
GGGTTGATGGTGGCCATTCCAGCCTTGTTCTTTCACCGCTATCTGCAACGGCGGGTCGATGAGCTGGTGGTCGGCATGGA
GCAGGAAGCGATCAAGCTGGTGGAAGTAGTGCAAGGTGATCGTGACGTCGATTTTGCTGAGGGCAGGGCGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| exbB | Pseudomonas stutzeri DSM 10701 |
89.048 |
100 |
0.89 |