Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   PG_RS02635 Genome accession   NC_002950
Coordinates   652188..653051 (+) Length   287 a.a.
NCBI ID   WP_004585131.1    Uniprot ID   A0A099WY42
Organism   Porphyromonas gingivalis W83     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 647188..658051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PG_RS10155 (PG0591) - 648190..649562 (+) 1373 WP_102983508.1 IS3-like element ISPg5 family transposase -
  PG_RS12050 - 649644..649865 (-) 222 WP_144043227.1 DUF1661 domain-containing protein -
  PG_RS02625 (PG0592) - 650028..650285 (+) 258 WP_004585129.1 type B 50S ribosomal protein L31 -
  PG_RS02630 (PG0593) - 650502..651998 (+) 1497 WP_005874875.1 DegQ family serine endoprotease -
  PG_RS02635 (PG0594) rpoS 652188..653051 (+) 864 WP_004585131.1 sigma-70 family RNA polymerase sigma factor Regulator
  PG_RS02640 (PG0595) rpsF 653148..653501 (+) 354 WP_004585132.1 30S ribosomal protein S6 -
  PG_RS02645 (PG0596) rpsR 653505..653777 (+) 273 WP_004585133.1 30S ribosomal protein S18 -
  PG_RS02650 (PG0597) rplI 653802..654341 (+) 540 WP_005874868.1 50S ribosomal protein L9 -
  PG_RS02655 (PG0598) - 654617..656572 (+) 1956 WP_005874872.1 LptF/LptG family permease -
  PG_RS02660 (PG0599) - 656575..657792 (+) 1218 WP_004585136.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 32602.30 Da        Isoelectric Point: 6.9850

>NTDB_id=21906 PG_RS02635 WP_004585131.1 652188..653051(+) (rpoS) [Porphyromonas gingivalis W83]
MRQLKISKSITNRESASLDKYLQEIGREDLISVEEEVELAQAIKRGDRKALEKLTRANLRFVVSVAKQYQNQGLSLPDLI
NEGNLGLIKAAEKFDETRGFKFISYAVWWIRQSILQALAEQSRIVRLPLNQVGTLNKIIKAQQKFEQENERRPSSAELAK
ELDIAEDKIADTMKVSGRHISVDAPFVEGEDNSLLDVLVNEDTPNTDKSLINESLAVEIERALSTLTEREAEIVKLFFGI
AGCQEMTLEEIGDKFGLTRERVRQIKEKAIRRLRQSNKCKNLKGYLG

Nucleotide


Download         Length: 864 bp        

>NTDB_id=21906 PG_RS02635 WP_004585131.1 652188..653051(+) (rpoS) [Porphyromonas gingivalis W83]
ATGAGGCAACTTAAAATTTCCAAGTCGATCACGAATCGTGAAAGCGCGTCTCTGGACAAGTATCTGCAGGAGATCGGTCG
CGAGGACCTGATCTCGGTCGAAGAAGAAGTAGAGTTGGCGCAAGCCATTAAACGCGGTGATCGCAAAGCTCTTGAAAAGC
TGACTCGTGCCAATCTTCGTTTCGTAGTATCCGTAGCCAAACAATACCAGAATCAGGGTCTCAGTTTGCCGGACTTGATC
AATGAAGGAAACCTCGGATTGATCAAAGCGGCAGAGAAATTCGACGAAACGCGCGGTTTTAAGTTTATCTCGTATGCCGT
ATGGTGGATCCGCCAGTCCATCCTGCAAGCATTGGCCGAGCAGTCTCGTATCGTCCGCCTGCCACTGAATCAGGTGGGAA
CACTCAACAAGATCATCAAGGCCCAGCAGAAATTCGAGCAGGAGAATGAGCGTCGCCCCTCGTCAGCAGAGTTGGCTAAG
GAGCTGGACATCGCAGAAGACAAAATTGCCGATACGATGAAAGTATCCGGACGGCATATCTCTGTGGATGCTCCTTTCGT
GGAAGGTGAAGACAACAGCCTGCTGGATGTACTCGTCAATGAGGATACCCCCAATACGGACAAGTCGCTGATCAATGAAT
CGCTGGCCGTTGAGATAGAAAGAGCTTTGTCCACACTGACGGAGCGCGAAGCAGAGATCGTGAAGCTGTTCTTCGGCATT
GCCGGCTGTCAAGAGATGACACTGGAAGAAATCGGCGACAAATTCGGTCTCACCCGCGAACGCGTCCGCCAGATAAAAGA
GAAGGCTATTCGCCGTTTGCGACAGAGCAACAAGTGCAAGAATCTGAAAGGTTATCTCGGCTAA

Domains

Predicted by InterProScan.

Sigma-70, region 4 (Sigma70_r4)

(222-275)

Sigma-70 region 2 (Sigma70_r2)

(56-123)

Sigma-70 region 3 (Sigma70_r3)

(134-202)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(17-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A099WY42

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

41.176

88.85

0.366

Multiple sequence alignment