Detailed information
Bioinformatically predicted
Overview
| Name | sxy/tfoX | Type | Regulator |
| Locus tag | Eco28_RS17150 | Genome accession | NZ_CP019944 |
| Coordinates | 3302356..3302985 (-) | Length | 209 a.a. |
| NCBI ID | WP_000839153.1 | Uniprot ID | A0A9Q6Y251 |
| Organism | Escherichia coli strain DSM 103246 | ||
| Function | positive regulator of competence gene (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 3293184..3330833 | 3302356..3302985 | within | 0 |
Gene organization within MGE regions
Location: 3293184..3330833
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Eco28_RS17100 (Eco28_03296) | tusE | 3293455..3293784 (+) | 330 | WP_000904442.1 | sulfurtransferase TusE | - |
| Eco28_RS17105 (Eco28_03297) | yccX | 3293781..3294059 (-) | 279 | WP_000048243.1 | acylphosphatase | - |
| Eco28_RS17110 (Eco28_03298) | rlmI | 3294154..3295344 (+) | 1191 | WP_000116288.1 | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | - |
| Eco28_RS17115 (Eco28_03299) | hspQ | 3295402..3295719 (+) | 318 | WP_001295356.1 | heat shock protein HspQ | - |
| Eco28_RS17120 (Eco28_03300) | yccU | 3295764..3296177 (-) | 414 | WP_000665217.1 | CoA-binding protein | - |
| Eco28_RS17125 (Eco28_03301) | yccT | 3296350..3297012 (+) | 663 | WP_000847785.1 | DUF2057 family protein | - |
| Eco28_RS17130 (Eco28_03302) | mgsA | 3297108..3297566 (+) | 459 | WP_000424181.1 | methylglyoxal synthase | - |
| Eco28_RS17135 (Eco28_03303) | helD | 3297598..3299652 (-) | 2055 | WP_000420536.1 | DNA helicase IV | - |
| Eco28_RS17140 (Eco28_03304) | yccF | 3299775..3300221 (+) | 447 | WP_001261231.1 | YccF domain-containing protein | - |
| Eco28_RS17145 (Eco28_03305) | yccS | 3300231..3302393 (+) | 2163 | WP_000875044.1 | YccS family putative transporter | - |
| Eco28_RS17150 (Eco28_03306) | sxy/tfoX | 3302356..3302985 (-) | 630 | WP_000839153.1 | CRP-S regulon transcriptional coactivator Sxy | Regulator |
| Eco28_RS17155 (Eco28_03307) | sulA | 3303204..3303713 (+) | 510 | WP_000288710.1 | SOS-induced cell division inhibitor SulA | - |
| Eco28_RS17165 (Eco28_03308) | ompA | 3304070..3305122 (+) | 1053 | WP_021577220.1 | porin OmpA | - |
| Eco28_RS17170 (Eco28_03309) | matP | 3305198..3305650 (-) | 453 | WP_000877158.1 | macrodomain Ter protein MatP | - |
| Eco28_RS17175 (Eco28_03310) | ycbZ | 3305836..3307596 (+) | 1761 | WP_021577219.1 | Lon protease family protein | - |
| Eco28_RS17180 (Eco28_03311) | fabA | 3307665..3308183 (+) | 519 | WP_000227927.1 | bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase | - |
| Eco28_RS17185 (Eco28_03312) | rmf | 3308253..3308420 (-) | 168 | WP_000828648.1 | ribosome modulation factor | - |
| Eco28_RS17190 (Eco28_03313) | pqiC | 3308676..3309239 (-) | 564 | WP_000759110.1 | membrane integrity-associated transporter subunit PqiC | - |
| Eco28_RS17195 (Eco28_03314) | pqiB | 3309236..3310876 (-) | 1641 | WP_000445541.1 | intermembrane transport protein PqiB | - |
| Eco28_RS17200 (Eco28_03315) | pqiA | 3310881..3312134 (-) | 1254 | WP_000333176.1 | membrane integrity-associated transporter subunit PqiA | - |
| Eco28_RS17205 (Eco28_03316) | uup | 3312264..3314171 (-) | 1908 | WP_000053081.1 | ABC transporter ATP-binding protein | - |
| Eco28_RS17210 (Eco28_03317) | rlmKL | 3314183..3316291 (-) | 2109 | WP_001086527.1 | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | - |
| Eco28_RS17215 (Eco28_03318) | ycbX | 3316535..3317644 (+) | 1110 | WP_000224285.1 | 6-N-hydroxylaminopurine resistance protein YcbX | - |
| Eco28_RS17220 (Eco28_03319) | zapC | 3317641..3318183 (-) | 543 | WP_001301917.1 | cell division protein ZapC | - |
| Eco28_RS17225 (Eco28_03320) | pyrD | 3318357..3319367 (-) | 1011 | WP_001295352.1 | quinone-dependent dihydroorotate dehydrogenase | - |
| Eco28_RS17230 (Eco28_03321) | ycbF | 3319478..3320215 (-) | 738 | WP_162535898.1 | fimbrial chaperone | - |
| Eco28_RS17235 (Eco28_03322) | ycbV | 3320181..3320696 (-) | 516 | WP_000919495.1 | fimbrial protein | - |
| Eco28_RS17240 (Eco28_03323) | ycbU | 3320704..3321246 (-) | 543 | WP_021577217.1 | fimbrial protein | - |
| Eco28_RS17245 (Eco28_03324) | elfG | 3321258..3322327 (-) | 1070 | Protein_3223 | fimbrial protein | - |
| Eco28_RS17250 (Eco28_03325) | elfC | 3322318..3324918 (-) | 2601 | WP_021577215.1 | fimbrial biogenesis usher protein | - |
| Eco28_RS28175 | - | 3324943..3325104 (-) | 162 | Protein_3225 | fimbrial protein | - |
| Eco28_RS17260 (Eco28_03327) | - | 3325195..3326423 (+) | 1229 | WP_088895425.1 | IS3-like element IS2 family transposase | - |
| Eco28_RS17265 (Eco28_03328) | - | 3326435..3326980 (-) | 546 | Protein_3227 | molecular chaperone | - |
| Eco28_RS17270 (Eco28_03329) | elfA | 3327063..3327602 (-) | 540 | WP_000750294.1 | fimbrial protein | - |
| Eco28_RS17280 (Eco28_03330) | ssuE | 3327958..3328533 (+) | 576 | WP_001263920.1 | NADPH-dependent FMN reductase | - |
| Eco28_RS17285 (Eco28_03331) | ssuA | 3328526..3329485 (+) | 960 | WP_001244348.1 | aliphatic sulfonate ABC transporter substrate-binding protein SsuA | - |
| Eco28_RS17290 (Eco28_03332) | ssuD | 3329482..3330627 (+) | 1146 | WP_000055978.1 | FMNH2-dependent alkanesulfonate monooxygenase | - |
Sequence
Protein
Download Length: 209 a.a. Molecular weight: 24147.02 Da Isoelectric Point: 9.2180
>NTDB_id=219011 Eco28_RS17150 WP_000839153.1 3302356..3302985(-) (sxy/tfoX) [Escherichia coli strain DSM 103246]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE
Nucleotide
Download Length: 630 bp
>NTDB_id=219011 Eco28_RS17150 WP_000839153.1 3302356..3302985(-) (sxy/tfoX) [Escherichia coli strain DSM 103246]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sxy/tfoX | Escherichia coli BW25113 strain K-12 |
100 |
100 |
1 |