Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   SPSF3K_RS10645 Genome accession   NZ_CP025420
Coordinates   2092076..2092849 (-) Length   257 a.a.
NCBI ID   WP_003107474.1    Uniprot ID   A0ABN0INT3
Organism   Streptococcus parauberis strain SPOF3K     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2087076..2097849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPSF3K_RS10630 (SPSF3K_02153) purC 2089831..2090538 (-) 708 WP_003105473.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  SPSF3K_RS10635 (SPSF3K_02154) - 2090686..2090928 (-) 243 WP_003104799.1 acyl carrier protein -
  SPSF3K_RS10640 (SPSF3K_02155) plsX 2090915..2091928 (-) 1014 WP_003108981.1 phosphate acyltransferase PlsX -
  SPSF3K_RS10645 (SPSF3K_02156) recO 2092076..2092849 (-) 774 WP_003107474.1 DNA repair protein RecO Machinery gene
  SPSF3K_RS10650 (SPSF3K_02157) - 2092839..2094017 (-) 1179 WP_003107475.1 pyridoxal phosphate-dependent aminotransferase -
  SPSF3K_RS10655 (SPSF3K_02158) - 2094128..2095090 (-) 963 WP_003103806.1 ribose-phosphate diphosphokinase -
  SPSF3K_RS10660 (SPSF3K_02159) - 2095199..2096554 (-) 1356 WP_037620364.1 CHAP domain-containing protein -
  SPSF3K_RS10665 (SPSF3K_02160) mreD 2096650..2097150 (-) 501 WP_003105481.1 rod shape-determining protein MreD -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 30009.29 Da        Isoelectric Point: 5.5416

>NTDB_id=219008 SPSF3K_RS10645 WP_003107474.1 2092076..2092849(-) (recO) [Streptococcus parauberis strain SPOF3K]
METSQSHGIVLYNKNFREDDKLVKIFTEQAGKRMFFVKHAGKSKLSSVIQPLTAADFILKLNDIGLSYIEDYNQVETYKK
INQDIFTLSYATYITALTDAALKDNEIDAQLFAFLKKTLDLMEEGLDYEVMTNIFEVQILDRFGVRLNFHDCVFCHRTGL
PFDFSHKYSGVLCPQHYHEDIHRNHLDPNVVYLLDQFQAIHFDELKVISLKPEMKEKLRLFIDELYDDYVGIHLKSKKFI
DDLSTWGQIMKPSSEDN

Nucleotide


Download         Length: 774 bp        

>NTDB_id=219008 SPSF3K_RS10645 WP_003107474.1 2092076..2092849(-) (recO) [Streptococcus parauberis strain SPOF3K]
ATGGAAACTAGTCAGTCACATGGTATTGTTCTATATAATAAGAACTTTCGAGAAGATGATAAGTTAGTTAAAATCTTCAC
TGAGCAAGCTGGCAAACGGATGTTTTTTGTTAAGCATGCAGGGAAATCCAAGTTAAGTTCAGTGATTCAGCCCCTAACAG
CCGCTGATTTTATCTTAAAATTAAACGACATTGGCTTATCTTATATAGAAGATTATAATCAAGTGGAAACTTATAAAAAA
ATTAATCAAGATATTTTTACCTTGTCTTATGCCACTTATATTACGGCTTTAACCGATGCAGCTTTAAAAGATAATGAGAT
TGATGCACAACTCTTTGCCTTTCTTAAAAAGACTTTAGATTTAATGGAAGAGGGTTTAGATTATGAAGTAATGACTAACA
TCTTTGAGGTTCAAATATTGGATCGCTTTGGGGTCAGATTAAATTTTCATGATTGTGTCTTTTGTCACCGGACAGGACTG
CCTTTTGATTTTTCGCATAAATATTCAGGTGTACTTTGTCCACAGCACTATCATGAAGATATTCACAGAAATCACTTAGA
TCCAAATGTAGTTTACTTATTAGATCAGTTTCAAGCCATTCACTTTGATGAGTTGAAAGTTATTTCTTTAAAACCGGAAA
TGAAGGAAAAACTCCGTTTGTTTATTGATGAATTGTATGACGATTATGTCGGAATTCATCTAAAGAGTAAAAAATTTATT
GACGACTTGTCCACATGGGGACAAATTATGAAGCCCAGCTCAGAGGATAATTAA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

67.331

97.665

0.658