Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   SPSF3K_RS08800 Genome accession   NZ_CP025420
Coordinates   1742279..1743940 (-) Length   553 a.a.
NCBI ID   WP_003107293.1    Uniprot ID   A0ABN0IRR0
Organism   Streptococcus parauberis strain SPOF3K     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1737279..1748940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPSF3K_RS08775 (SPSF3K_01779) - 1737450..1739303 (-) 1854 WP_003107290.1 heavy metal translocating P-type ATPase -
  SPSF3K_RS08780 (SPSF3K_01780) - 1739535..1739810 (-) 276 WP_003104951.1 HU family DNA-binding protein -
  SPSF3K_RS08785 (SPSF3K_01781) - 1739899..1740525 (-) 627 WP_003108184.1 YpmS family protein -
  SPSF3K_RS08790 (SPSF3K_01782) - 1740512..1741345 (-) 834 WP_003107291.1 SGNH/GDSL hydrolase family protein -
  SPSF3K_RS08795 (SPSF3K_01783) - 1741338..1742177 (-) 840 WP_003108182.1 DegV family protein -
  SPSF3K_RS08800 (SPSF3K_01784) recN 1742279..1743940 (-) 1662 WP_003107293.1 DNA repair protein RecN Machinery gene
  SPSF3K_RS08805 (SPSF3K_01785) - 1743956..1744426 (-) 471 WP_003104351.1 arginine repressor -
  SPSF3K_RS08810 (SPSF3K_01786) - 1744413..1745240 (-) 828 WP_003105099.1 TlyA family RNA methyltransferase -
  SPSF3K_RS08815 (SPSF3K_01787) - 1745233..1746102 (-) 870 WP_003108180.1 polyprenyl synthetase family protein -
  SPSF3K_RS08820 (SPSF3K_01788) - 1746102..1746317 (-) 216 WP_003102366.1 exodeoxyribonuclease VII small subunit -
  SPSF3K_RS08825 (SPSF3K_01789) xseA 1746307..1747635 (-) 1329 WP_003107300.1 exodeoxyribonuclease VII large subunit -
  SPSF3K_RS08830 (SPSF3K_01790) - 1747766..1748608 (-) 843 WP_003107302.1 NAD(P)H-hydrate dehydratase -

Sequence

Protein


Download         Length: 553 a.a.        Molecular weight: 62259.18 Da        Isoelectric Point: 4.6526

>NTDB_id=218992 SPSF3K_RS08800 WP_003107293.1 1742279..1743940(-) (recN) [Streptococcus parauberis strain SPOF3K]
MLLEISIKNFAIIEEISLTFENGMTVLTGETGAGKSIIIDAMNMMLGARASTEVIRHGQQKAEIEGFFSLEKNLDLQALL
EDNGIPVQDELIIRRDIFANGRSVSRINGQMVNLTFLKEVGQYLVDIHGQHDQEELMRASHHLAILDSFGNQDFKDLKTS
YQETFNSYKTVRKRVIERQKNEREHKERIEMLTFQLAEIEAVDLHRGEEESLNQEHHRLLNHKNIADTLANAYAMLDNDD
ISSLNNVRSAMNDLLTIENYDSDYKAISTSISEAYYILEDVTKQLSDTIDSLDFNAGRLMEIESRLTLINSLTRKYGGSA
DDLLDYYDNIQKEYQLLTGDNMASGASDSQLKLLEKELVSKATQLSEQRQNLALQLEADIKAELKDLYMEKADFQVKFDK
SKFNSQGNQTVEFYISTNPGEGFKPLVKVASGGELSRLMLAIKSAVSKREDKTSIVFDEVDTGVSGRVAQAIAKKIHKIG
QNGQVLAISHLPQVIAIADYQFFISKESKEDSTVSTVSLLTYEERVEEIANMIAANEVTETAREQARDLLAKP

Nucleotide


Download         Length: 1662 bp        

>NTDB_id=218992 SPSF3K_RS08800 WP_003107293.1 1742279..1743940(-) (recN) [Streptococcus parauberis strain SPOF3K]
ATGTTATTAGAAATTTCAATTAAAAATTTTGCCATCATTGAAGAAATTTCATTGACGTTTGAAAATGGCATGACTGTCCT
AACTGGCGAAACAGGAGCCGGAAAGTCAATTATTATTGATGCGATGAATATGATGCTTGGTGCGCGTGCCAGTACTGAGG
TTATTCGTCATGGTCAACAAAAAGCTGAAATTGAAGGTTTCTTTTCACTTGAAAAAAATTTGGATCTTCAAGCTCTCTTA
GAAGATAATGGTATTCCAGTTCAAGATGAACTCATTATTCGCAGAGATATTTTTGCTAATGGTCGAAGTGTCAGTCGTAT
AAATGGGCAAATGGTTAATTTAACCTTTTTAAAAGAAGTTGGACAGTATCTAGTTGATATTCATGGTCAACATGACCAAG
AAGAATTAATGCGCGCATCTCATCACTTAGCAATTTTAGATTCATTTGGGAATCAAGATTTTAAGGACCTTAAAACAAGC
TATCAAGAAACATTTAACAGTTATAAAACGGTCAGAAAACGTGTCATTGAACGTCAGAAAAATGAACGTGAACATAAAGA
ACGGATTGAGATGTTAACCTTTCAACTAGCTGAAATCGAAGCAGTTGATTTACATAGGGGTGAAGAAGAAAGCCTTAATC
AGGAACACCATCGGCTTTTAAATCACAAAAATATTGCTGACACTTTAGCTAATGCCTATGCTATGCTTGATAATGATGAT
ATTTCAAGCCTAAACAATGTTCGGTCTGCAATGAATGATCTTTTGACAATTGAAAATTATGATTCTGATTATAAAGCTAT
TTCCACAAGTATTTCGGAAGCTTATTATATTTTAGAAGATGTGACCAAACAATTATCTGATACAATTGATTCGCTTGACT
TCAATGCAGGTCGTTTGATGGAGATAGAAAGTCGTTTGACACTCATTAATAGTTTGACACGTAAATATGGTGGATCCGCT
GATGACTTGTTAGATTACTATGATAATATTCAAAAAGAATATCAACTTCTCACTGGTGACAACATGGCATCAGGTGCAAG
TGACTCCCAATTAAAATTGTTAGAAAAAGAGCTTGTTAGTAAGGCAACACAATTAAGCGAACAACGCCAAAATTTAGCTC
TGCAATTAGAAGCTGATATTAAGGCAGAGTTAAAAGATTTATACATGGAAAAGGCTGATTTTCAGGTTAAATTTGATAAA
TCAAAATTTAATTCTCAAGGGAACCAAACAGTTGAATTTTATATTTCAACAAATCCTGGTGAAGGCTTCAAGCCCTTGGT
AAAAGTAGCTTCTGGTGGGGAATTATCTCGTCTGATGTTAGCTATTAAATCTGCTGTTTCGAAAAGAGAAGACAAAACAA
GTATTGTCTTTGATGAAGTGGACACAGGCGTTTCTGGTCGTGTTGCGCAAGCTATTGCCAAAAAAATTCATAAAATTGGT
CAAAATGGACAAGTTCTGGCTATCTCACATTTACCACAGGTGATTGCTATTGCTGACTACCAGTTCTTCATTTCCAAAGA
AAGCAAGGAGGATTCTACTGTTTCGACGGTCAGTCTTCTTACCTATGAAGAACGTGTTGAAGAAATTGCTAATATGATAG
CAGCAAATGAAGTAACAGAAACGGCAAGAGAACAAGCAAGAGACCTGTTAGCAAAACCATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

44.251

100

0.459