Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   SPSF3K_RS05380 Genome accession   NZ_CP025420
Coordinates   1079004..1080773 (+) Length   589 a.a.
NCBI ID   WP_004234263.1    Uniprot ID   A0ABP2T0A2
Organism   Streptococcus parauberis strain SPOF3K     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1074004..1085773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPSF3K_RS05365 (SPSF3K_01090) - 1074812..1076689 (+) 1878 WP_003106601.1 ABC-F family ATP-binding cassette domain-containing protein -
  SPSF3K_RS05370 (SPSF3K_01091) - 1076693..1077166 (+) 474 WP_003105038.1 GNAT family N-acetyltransferase -
  SPSF3K_RS05375 (SPSF3K_01092) rcrP 1077268..1079004 (+) 1737 WP_003102488.1 ABC transporter ATP-binding protein Regulator
  SPSF3K_RS05380 (SPSF3K_01093) rcrQ 1079004..1080773 (+) 1770 WP_004234263.1 ABC transporter ATP-binding protein Regulator
  SPSF3K_RS05385 (SPSF3K_01094) gdhA 1080904..1082250 (+) 1347 WP_003102566.1 NADP-specific glutamate dehydrogenase -
  SPSF3K_RS05390 (SPSF3K_01095) - 1082316..1082726 (+) 411 WP_003106604.1 peptide deformylase -
  SPSF3K_RS05395 (SPSF3K_01096) - 1082763..1082948 (-) 186 WP_003102863.1 hypothetical protein -
  SPSF3K_RS05400 (SPSF3K_01097) - 1082954..1083982 (+) 1029 Protein_1070 ABC transporter ATP-binding protein -
  SPSF3K_RS05405 (SPSF3K_01098) mvk 1084145..1085023 (+) 879 WP_004234259.1 mevalonate kinase -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 66120.55 Da        Isoelectric Point: 5.9269

>NTDB_id=218967 SPSF3K_RS05380 WP_004234263.1 1079004..1080773(+) (rcrQ) [Streptococcus parauberis strain SPOF3K]
MTEKHVFKRIWTYLRKYKTSLISAVLLKVVSALMSSLEPFVLGLAITEISNNLIEMAKGVEGAGINKSYIAFILFLYFIR
AVFFEIGSYGSNYFMTKAVQSGIKDLRQDLSHKINKIPVSYFDKHQFGDMLGRFTSDVETVSNALQQAFLQIVNAFLTIT
FAVIMALYINAPLASILIISVPLIYFSSQFVLKKSQPYFKEQAKVLGDMNGFVQENLSGFNILKLYGREDRSEEDFHAIT
DRLQEVGFKASFLSGIMMPVLHFISDSVYMIIALLAGLQVLAGKLAIGNMQAFVQYIWQISQPIQTITQLAPVLQSSKSS
LERIFTVLDETEDLSKENVSLTVPLTGQVSFNQVDFSYNDSKPLIKDFTLDVEPGEMIAIVGPTGAGKTTLINLLMRFYD
VKSGSITVDGMDIREISRQAYRQQFGMVLQDAWLFEGTIQENLQFGNLSATEDDIIQAAETANVDHFISTLPGGYQMMMN
QESSNISLGQKQLLTIARALLADPKILILDEATSSVDTRLELLIQKAMKRLMKGRTSFVIAHRLSTIQEADKILVLKDGQ
IIEQGSHYNLLEARGFYYDLYYSQFKTSN

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=218967 SPSF3K_RS05380 WP_004234263.1 1079004..1080773(+) (rcrQ) [Streptococcus parauberis strain SPOF3K]
ATGACAGAAAAACATGTATTCAAAAGAATCTGGACTTATCTTAGGAAATATAAAACATCATTAATTTCAGCTGTCCTTTT
AAAAGTCGTTAGTGCCTTAATGAGTTCTTTAGAGCCTTTTGTCCTTGGTCTTGCTATTACAGAGATATCAAATAACCTCA
TTGAGATGGCTAAAGGAGTAGAAGGGGCAGGAATTAATAAATCTTATATTGCTTTTATCCTCTTCTTATATTTTATCCGT
GCTGTCTTTTTTGAAATCGGTTCATATGGCTCTAACTATTTTATGACCAAGGCTGTACAATCAGGGATAAAAGATTTACG
TCAGGACTTAAGTCATAAAATTAATAAAATTCCAGTTTCTTATTTTGATAAGCATCAATTTGGAGATATGTTGGGACGCT
TTACATCCGACGTAGAAACTGTCTCAAATGCTTTACAACAAGCCTTTTTGCAAATTGTTAATGCCTTCTTAACGATTACT
TTTGCAGTTATTATGGCCCTTTATATTAATGCGCCTTTGGCTTCAATTTTGATTATTAGCGTTCCTTTAATCTATTTTTC
TTCTCAATTTGTCTTGAAAAAATCACAACCCTACTTTAAGGAGCAAGCTAAAGTATTAGGGGATATGAATGGTTTTGTTC
AAGAGAATTTAAGCGGATTTAATATTCTTAAATTATATGGTCGCGAGGATCGATCTGAGGAAGACTTTCATGCCATCACA
GATCGCCTTCAAGAAGTTGGGTTCAAAGCAAGTTTCTTATCTGGGATTATGATGCCCGTATTGCATTTTATCTCTGACTC
GGTCTATATGATTATAGCCCTATTAGCCGGACTCCAAGTTTTGGCAGGAAAACTAGCTATTGGTAATATGCAGGCTTTTG
TTCAGTATATCTGGCAAATTAGTCAGCCGATTCAAACAATTACCCAATTAGCTCCCGTTCTTCAAAGTTCTAAATCATCA
CTCGAACGGATTTTTACGGTTCTTGATGAAACTGAAGATCTTTCTAAGGAAAATGTCTCACTAACAGTGCCCTTGACAGG
ACAAGTATCCTTTAATCAAGTTGACTTTTCCTATAATGATTCTAAGCCACTGATTAAAGATTTTACCTTAGACGTTGAAC
CTGGTGAAATGATTGCTATCGTTGGTCCGACTGGCGCTGGTAAAACAACTTTGATAAATCTTCTTATGCGTTTCTATGAT
GTTAAGAGTGGCTCAATTACTGTAGATGGGATGGATATTAGAGAGATTTCTAGGCAAGCCTATCGTCAGCAATTCGGGAT
GGTTTTACAGGATGCTTGGTTGTTTGAAGGGACTATTCAAGAGAATCTTCAATTTGGGAATTTGTCGGCGACAGAAGATG
ATATCATTCAAGCCGCTGAGACGGCCAACGTTGATCACTTTATTAGTACCTTACCTGGCGGTTATCAGATGATGATGAAC
CAGGAATCAAGCAATATTTCTCTGGGGCAAAAACAACTCTTAACTATTGCGCGTGCGCTGTTAGCAGATCCGAAAATACT
GATTTTGGACGAGGCTACCTCATCAGTCGATACCCGTTTAGAATTATTAATTCAAAAAGCGATGAAACGCTTGATGAAAG
GTAGAACAAGTTTTGTGATTGCTCACCGTTTATCAACGATTCAAGAAGCAGATAAGATACTAGTTCTAAAAGATGGCCAA
ATTATTGAACAAGGAAGTCATTACAATCTCCTAGAGGCTCGTGGATTTTATTATGATCTCTATTATAGCCAGTTCAAAAC
ATCCAATTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(22-303)

ABC transporter (ABC_tran)

(366-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

42.517

99.83

0.424

Multiple sequence alignment