Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   SPSF3K_RS05375 Genome accession   NZ_CP025420
Coordinates   1077268..1079004 (+) Length   578 a.a.
NCBI ID   WP_003102488.1    Uniprot ID   A0ABN0IT87
Organism   Streptococcus parauberis strain SPOF3K     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1072268..1084004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPSF3K_RS05355 (SPSF3K_01088) dapB 1072844..1073611 (+) 768 WP_004234265.1 4-hydroxy-tetrahydrodipicolinate reductase -
  SPSF3K_RS05360 (SPSF3K_01089) - 1073608..1074819 (+) 1212 WP_003102825.1 CCA tRNA nucleotidyltransferase -
  SPSF3K_RS05365 (SPSF3K_01090) - 1074812..1076689 (+) 1878 WP_003106601.1 ABC-F family ATP-binding cassette domain-containing protein -
  SPSF3K_RS05370 (SPSF3K_01091) - 1076693..1077166 (+) 474 WP_003105038.1 GNAT family N-acetyltransferase -
  SPSF3K_RS05375 (SPSF3K_01092) rcrP 1077268..1079004 (+) 1737 WP_003102488.1 ABC transporter ATP-binding protein Regulator
  SPSF3K_RS05380 (SPSF3K_01093) rcrQ 1079004..1080773 (+) 1770 WP_004234263.1 ABC transporter ATP-binding protein Regulator
  SPSF3K_RS05385 (SPSF3K_01094) gdhA 1080904..1082250 (+) 1347 WP_003102566.1 NADP-specific glutamate dehydrogenase -
  SPSF3K_RS05390 (SPSF3K_01095) - 1082316..1082726 (+) 411 WP_003106604.1 peptide deformylase -
  SPSF3K_RS05395 (SPSF3K_01096) - 1082763..1082948 (-) 186 WP_003102863.1 hypothetical protein -
  SPSF3K_RS05400 (SPSF3K_01097) - 1082954..1083982 (+) 1029 Protein_1070 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 65239.69 Da        Isoelectric Point: 5.1015

>NTDB_id=218966 SPSF3K_RS05375 WP_003102488.1 1077268..1079004(+) (rcrP) [Streptococcus parauberis strain SPOF3K]
MGLIWSYLKNKKYWLFLDFVGAIFFVLVNLGLPTILAKMIDQGVVQNNTDALYYWAMMMFIIVVLGVIGRIILSYASSKL
TTTMIKELRNDMYSRLQDYSHTEYEKIGVSSLVTRITNDAFVLMQFAEMSLRLGVVTPLMMIFSVVMILLTSPSLAWIVA
VLMPLLVFVVIYVAIKTKPLSEKQQNTLDKINQLVRENLTGLRVIRAFSREDFQEERFAQKNQEYAETSRQLFTLTGLTE
PLFVQIIIAMIVAIVWFALDPLTNQEIKIGDLVAFIEYSFHAMFSFLMFANLFTMYPRMSVSSKRINEVLDMPISISKNE
DGITESETKGYLEFDNVTFSYPGETENPVLQNISFKTKPGETIAFIGSTGSGKSSLVNLIPRFFDVTFGRILVDGIDVRD
YQLKALRAKIGFIPQKALLFTGTIEDNLKYGKADASLPELDQATEVSQAREFIASREEGYQTHLAEAGSNLSGGQKQRLS
IARAVVKKPDIYIFDDSFSALDYKTDAELRRRLKEVTDNATVLIVAQRVGTIMDADQIIVLDQGQIVGRGTHEELLESNE
IYAEIAKSQLNSKKEVAD

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=218966 SPSF3K_RS05375 WP_003102488.1 1077268..1079004(+) (rcrP) [Streptococcus parauberis strain SPOF3K]
ATGGGATTAATTTGGTCTTATTTAAAAAACAAAAAGTATTGGCTGTTTTTAGATTTTGTAGGAGCTATTTTTTTCGTATT
AGTTAACTTAGGACTCCCGACAATTTTGGCCAAGATGATTGACCAAGGAGTTGTTCAAAACAATACAGATGCTTTATATT
ATTGGGCTATGATGATGTTTATCATTGTTGTCTTAGGAGTTATTGGACGTATCATTCTATCCTATGCTTCCAGCAAATTA
ACAACAACAATGATTAAGGAACTTCGCAATGACATGTACAGCCGCTTGCAGGACTATTCTCATACGGAGTATGAGAAAAT
TGGTGTCTCATCATTGGTGACTCGGATAACAAATGACGCCTTTGTACTTATGCAATTTGCTGAAATGTCATTAAGATTAG
GTGTTGTGACACCATTGATGATGATTTTTTCTGTGGTGATGATACTATTAACCAGTCCTTCGCTTGCTTGGATTGTGGCT
GTATTGATGCCATTACTAGTTTTTGTAGTTATTTATGTTGCTATCAAAACCAAACCCTTATCTGAGAAACAACAAAATAC
GCTGGATAAGATTAACCAGCTTGTTCGCGAAAATTTAACAGGTTTACGTGTTATCAGAGCTTTTTCAAGAGAGGACTTTC
AAGAAGAACGTTTTGCTCAAAAGAACCAAGAATATGCTGAAACATCACGTCAATTATTCACACTGACTGGTTTGACAGAG
CCTTTATTTGTCCAAATTATTATTGCAATGATTGTAGCAATTGTCTGGTTTGCTTTAGATCCTTTAACAAATCAAGAAAT
CAAAATTGGTGACTTAGTAGCATTTATTGAATATAGTTTCCATGCCATGTTCTCTTTCTTGATGTTTGCCAATCTCTTTA
CCATGTACCCTCGCATGTCTGTTTCAAGCAAGCGAATTAATGAAGTGCTGGATATGCCAATTTCAATTTCCAAAAATGAG
GATGGGATTACTGAAAGTGAAACTAAAGGTTACCTTGAATTTGATAATGTTACCTTTTCTTATCCTGGAGAGACAGAAAA
TCCTGTCCTTCAAAATATCTCATTTAAAACAAAACCTGGGGAAACCATTGCTTTTATTGGATCGACAGGGTCAGGTAAGT
CATCCCTTGTTAATTTAATCCCTCGATTCTTTGATGTTACATTCGGGAGAATACTGGTCGACGGCATCGATGTCAGAGAT
TACCAACTAAAAGCTTTGCGTGCAAAGATAGGCTTTATTCCACAAAAAGCTCTGCTATTCACCGGGACTATCGAAGATAA
TCTAAAATATGGAAAAGCAGATGCTAGCCTACCAGAACTAGATCAAGCCACAGAGGTTTCTCAGGCTCGCGAATTTATAG
CCAGCCGTGAGGAAGGTTATCAAACGCATTTGGCTGAGGCTGGAAGCAATCTATCTGGAGGACAAAAGCAAAGATTGTCG
ATTGCCCGAGCAGTCGTTAAAAAACCAGATATTTACATCTTTGATGATTCCTTCTCAGCATTAGATTATAAGACAGATGC
CGAATTAAGAAGACGCTTGAAAGAAGTGACGGACAATGCAACTGTCTTAATTGTCGCTCAGCGTGTTGGAACAATTATGG
ATGCTGATCAAATCATTGTTCTTGATCAAGGACAAATTGTTGGTCGAGGTACGCATGAAGAATTACTTGAAAGTAATGAG
ATTTATGCTGAAATTGCCAAATCTCAATTAAATAGTAAAAAGGAGGTGGCTGACTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(16-280)

ABC transporter (ABC_tran)

(350-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

41.21

91.522

0.377