Detailed information NTG0218965

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: SPSF3K_RS05015
• Genome accession: NZ_CP025420
• Coordinates: 1004605..1005714 (+)
• Length: 369 a.a.
• NCBI ID: WP_003105447.1
• Uniprot ID: A0ABN0ITI9
• Organism: Streptococcus parauberis strain SPOF3K
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 999605..1010714

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SPSF3K_RS04990 (SPSF3K_01016)	-	999908..1001038 (+)	1131	WP_003106529.1	aminotransferase	-
SPSF3K_RS04995 (SPSF3K_01017)	-	1001053..1001865 (+)	813	WP_003104103.1	transporter substrate-binding domain-containing protein	-
SPSF3K_RS05000 (SPSF3K_01018)	rpsU	1001993..1002169 (+)	177	WP_000048058.1	30S ribosomal protein S21	-
SPSF3K_RS05005 (SPSF3K_01019)	mscL	1002278..1002658 (-)	381	WP_003104850.1	large conductance mechanosensitive channel protein MscL	-
SPSF3K_RS05010 (SPSF3K_01020)	dnaG	1002785..1004596 (+)	1812	WP_003106531.1	DNA primase	-
SPSF3K_RS05015 (SPSF3K_01021)	rpoS	1004605..1005714 (+)	1110	WP_003105447.1	RNA polymerase sigma factor RpoD	Regulator
SPSF3K_RS05020 (SPSF3K_01022)	-	1005868..1006206 (+)	339	WP_004234304.1	metal-sulfur cluster assembly factor	-
SPSF3K_RS05025 (SPSF3K_01023)	rfbD	1006298..1007149 (+)	852	WP_003103693.1	dTDP-4-dehydrorhamnose reductase	-
SPSF3K_RS05030 (SPSF3K_01024)	cps2T	1007265..1008419 (+)	1155	WP_004234303.1	beta 1-4 rhamnosyltransferase Cps2T	-
SPSF3K_RS05035 (SPSF3K_01025)	-	1008409..1009341 (+)	933	WP_003105744.1	glycosyltransferase family 2 protein	-
SPSF3K_RS05040 (SPSF3K_01026)	-	1009345..1010148 (+)	804	WP_003103004.1	ABC transporter permease	-

Sequence

Protein

• Length: 369 a.a.
• Molecular weight: 42201.87 Da
• Isoelectric Point: 4.4893

>NTDB_id=218965 SPSF3K_RS05015 WP_003105447.1 1004605..1005714(+) (rpoS) [Streptococcus parauberis strain SPOF3K]
MAKENDITTFNVQVADFIRNHKKEGSAVDDEITEKLVIPFVLDADQIDDLLERLTDGGISITDKEGNPSSKYVVEEPKPE
ELTDEQLIGSNSAKVNDPVRMYLKEIGVVPLLTGEEEKELAVAVDEGDLEAKQRLAEANLRLVVSIAKRYVGRGMQFLDL
IQEGNMGLMKAVDKFDYSKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIA
ERMEMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLDTLTDREENVLRLRFG
LDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQLRDFIED

Nucleotide

• Length: 1110 bp

>NTDB_id=218965 SPSF3K_RS05015 WP_003105447.1 1004605..1005714(+) (rpoS) [Streptococcus parauberis strain SPOF3K]
ATGGCCAAAGAAAACGATATTACAACTTTTAACGTTCAAGTTGCAGATTTTATTCGTAATCATAAAAAAGAAGGATCTGC
AGTTGATGATGAAATTACAGAAAAATTAGTTATCCCATTCGTTTTAGATGCTGACCAAATTGATGATTTATTAGAACGCC
TGACTGATGGCGGTATTTCTATCACAGATAAAGAAGGAAATCCTTCATCTAAATATGTTGTTGAAGAACCAAAACCTGAA
GAACTTACAGATGAGCAATTAATCGGAAGTAATTCAGCTAAGGTAAATGATCCAGTTCGTATGTACTTGAAAGAAATTGG
GGTTGTTCCACTATTAACTGGTGAAGAAGAAAAAGAATTAGCAGTAGCTGTTGATGAAGGCGATTTAGAAGCTAAACAAC
GTCTGGCTGAAGCTAATTTACGTCTTGTAGTATCTATTGCTAAACGCTATGTTGGTCGTGGCATGCAATTTTTGGATTTA
ATTCAAGAAGGTAATATGGGTCTTATGAAAGCAGTTGATAAGTTTGACTATTCTAAAGGTTTTAAATTTTCAACTTATGC
AACATGGTGGATTCGCCAAGCAATTACACGTGCCATCGCCGACCAAGCACGTACTATTCGTATTCCAGTACATATGGTCG
AAACGATTAATAAATTAGTTAGAGAACAACGTAATTTGTTACAAGAATTAGGACAAGACCCAACGCCAGAACAAATTGCT
GAGCGCATGGAAATGACACCTGATAAAGTACGTGAAATTCTAAAAATTGCTCAAGAACCTGTTTCACTTGAAACTCCTAT
TGGTGAAGAAGATGATAGCCATCTTGGTGATTTTATTGAAGATGAAGTGATTGAAAATCCAGTAGATTATACAACACGTG
TTGTTTTACGTGAACAATTAGATGAAGTTTTAGATACATTAACTGACCGTGAAGAAAATGTATTGAGACTACGTTTTGGT
CTTGATGATGGGAAAATGCGTACTTTAGAAGATGTTGGTAAAGTTTTCAACGTTACAAGAGAGCGTATCCGTCAAATTGA
AGCCAAAGCACTCCGCAAACTCCGCCACCCAAGCAGAAGCAAACAATTAAGAGACTTTATTGAGGACTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (135-204)

• Sigma-70 factor, region 1.1 (Sigma70_r1_1) (13-84)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (97-129)

• Sigma-70, region 4 (Sigma70_r4) (303-356)

• Sigma-70 region 3 (Sigma70_r3) (214-290)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	45.578	79.675	0.363