Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   CRH08_RS08325 Genome accession   NZ_CP025419
Coordinates   1602807..1603610 (-) Length   267 a.a.
NCBI ID   WP_009910233.1    Uniprot ID   -
Organism   Streptococcus suis strain SH0104     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1597807..1608610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRH08_RS08305 pbp2b 1598007..1600082 (-) 2076 WP_002935847.1 penicillin-binding protein PBP2B -
  CRH08_RS08310 - 1600174..1600629 (-) 456 WP_002935846.1 ATP-binding cassette domain-containing protein -
  CRH08_RS08315 - 1600868..1602070 (+) 1203 Protein_1573 IS110 family transposase -
  CRH08_RS08325 vicX 1602807..1603610 (-) 804 WP_009910233.1 MBL fold metallo-hydrolase Regulator
  CRH08_RS08330 micB 1603617..1604966 (-) 1350 WP_009910235.1 cell wall metabolism sensor histidine kinase VicK Regulator
  CRH08_RS08335 yycF 1604959..1605663 (-) 705 WP_004298854.1 response regulator YycF -
  CRH08_RS08340 - 1605857..1606618 (+) 762 WP_002935839.1 amino acid ABC transporter ATP-binding protein -
  CRH08_RS08345 - 1606629..1607468 (+) 840 WP_002935837.1 transporter substrate-binding domain-containing protein -
  CRH08_RS08350 - 1607483..1608181 (+) 699 WP_013730248.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29645.73 Da        Isoelectric Point: 5.7755

>NTDB_id=218874 CRH08_RS08325 WP_009910233.1 1602807..1603610(-) (vicX) [Streptococcus suis strain SH0104]
MIGKGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKVTSLLAEIDRKPEDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANELTWQAMESKLGKIDVAQKHIFELGAMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMVGIV
ENADAYLIESNHDIEILRSGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTKKIYLGHLSKENNIKELAHMTMVNQL
AQADLGVGVDFQVYDTSPDTATPLTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=218874 CRH08_RS08325 WP_009910233.1 1602807..1603610(-) (vicX) [Streptococcus suis strain SH0104]
ATGATCGGAAAAGGTTTTAATTATAGTATTTTAGCTTCGGGGTCCAGCGGGAATTGTTTTTACCTAGAAACAGATAAAAA
GAAAATTTTAGTGGATGCTGGCTTATCAGGGAAAAAGGTTACCAGTCTTTTGGCGGAAATTGATCGAAAGCCTGAGGATA
TTGATGCTATCCTGGTAACGCATGAACATAGCGATCACATCCATGGTATCGGTGTTTTAGCACGTAAGTATGGCATGGAT
ATTTATGCCAATGAATTGACCTGGCAGGCTATGGAGAGCAAATTGGGCAAGATTGATGTGGCTCAAAAACATATCTTCGA
ATTGGGTGCTATGAAGACTTTTGGTGACCTAGATATTGAGTCCTTTGGAGTTAGCCATGATGCTGCATGTCCGCAATTTT
ACCGTTTTATGAAGGATGACAAATCCTTTGTTATGTTGACGGATACAGGCTATGTCAGTGACCGCATGGTTGGAATTGTA
GAAAATGCCGATGCTTATTTGATTGAATCGAACCATGATATTGAAATTTTGCGCTCAGGTTCTTATTCATGGAATTTGAA
GCAACGGATTCTATCCGATAAGGGACATCTTTGTAACGAAGATGGAGCTGATGCCATGATTCGCTCGTTGGGAAATCGGA
CCAAAAAGATTTACCTAGGGCATTTGTCAAAGGAAAACAATATCAAGGAATTGGCTCACATGACCATGGTTAATCAATTG
GCTCAGGCTGATTTAGGAGTTGGAGTGGATTTCCAAGTCTATGACACATCGCCAGATACAGCGACTCCCTTGACCAAGAT
TTGA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.779

100

0.768