Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   CRH08_RS07025 Genome accession   NZ_CP025419
Coordinates   1340689..1341171 (+) Length   160 a.a.
NCBI ID   WP_002938080.1    Uniprot ID   -
Organism   Streptococcus suis strain SH0104     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1335689..1346171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRH08_RS07000 - 1336937..1338247 (-) 1311 WP_002938090.1 GntP family permease -
  CRH08_RS07005 folK 1338298..1338786 (-) 489 WP_009910002.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  CRH08_RS07010 folB 1338783..1339145 (-) 363 WP_002938086.1 dihydroneopterin aldolase -
  CRH08_RS07015 folP 1339138..1339950 (-) 813 WP_002938084.1 dihydropteroate synthase -
  CRH08_RS07020 folE 1339959..1340522 (-) 564 WP_002938082.1 GTP cyclohydrolase I FolE -
  CRH08_RS07025 mutX 1340689..1341171 (+) 483 WP_002938080.1 8-oxo-dGTP diphosphatase Machinery gene
  CRH08_RS07030 - 1341220..1341897 (-) 678 WP_002938079.1 DUF4956 domain-containing protein -
  CRH08_RS07035 - 1341884..1342627 (-) 744 WP_002938076.1 polyphosphate polymerase domain-containing protein -
  CRH08_RS07040 - 1342820..1343122 (+) 303 WP_002938072.1 hypothetical protein -
  CRH08_RS07045 - 1343143..1343409 (-) 267 WP_002938070.1 DUF2087 domain-containing protein -
  CRH08_RS07050 pheT 1343464..1345863 (-) 2400 WP_024409174.1 phenylalanine--tRNA ligase subunit beta -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 18496.88 Da        Isoelectric Point: 4.5662

>NTDB_id=218866 CRH08_RS07025 WP_002938080.1 1340689..1341171(+) (mutX) [Streptococcus suis strain SH0104]
MTKKPVQLATICYIDNGKEFLLLHRNKKENDVHQGKWIGVGGKLEPGETPQACAIREIFEETGLTVTKHALKGVITFPDF
TPNTDWYTYVFKITGFEGSLIDCNEGDLEWVPYDQVLSKPTWEGDRHFQEWLLEDKPFFSACFRYDGGKLLDYSVDFYEE

Nucleotide


Download         Length: 483 bp        

>NTDB_id=218866 CRH08_RS07025 WP_002938080.1 1340689..1341171(+) (mutX) [Streptococcus suis strain SH0104]
ATGACCAAGAAACCCGTCCAACTCGCTACGATTTGCTACATTGATAATGGTAAGGAATTTCTTCTCCTTCATCGAAACAA
GAAAGAAAACGATGTCCATCAAGGAAAATGGATTGGAGTTGGTGGCAAACTAGAACCCGGCGAAACGCCACAGGCTTGTG
CCATTCGAGAAATCTTTGAGGAAACTGGGCTTACTGTAACAAAGCATGCTCTAAAAGGAGTGATAACCTTCCCAGACTTT
ACTCCAAACACAGACTGGTACACCTATGTCTTTAAGATAACTGGTTTTGAAGGAAGTCTTATTGACTGCAATGAAGGTGA
CTTAGAGTGGGTTCCCTATGACCAAGTCTTGTCCAAACCAACTTGGGAGGGCGACCGGCATTTTCAAGAATGGCTATTAG
AGGACAAACCATTTTTTTCCGCTTGCTTCCGCTATGATGGGGGCAAACTGCTTGATTACAGTGTTGATTTTTATGAAGAA
TAA

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(8-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

81.046

95.625

0.775

Multiple sequence alignment