Detailed information NTG0218818

Bioinformatically predicted

Overview

• Name: rpoN/rpoN1
• Type: Machinery gene
• Locus tag: B2B10_RS16475
• Genome accession: NZ_CP019928
• Coordinates: 3585034..3586455 (-)
• Length: 473 a.a.
• NCBI ID: WP_114852117.1
• Uniprot ID: -
• Organism: Bordetella avium strain SV1
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3580034..3591455

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
B2B10_RS16450	-	3580656..3581285 (+)	630	WP_012418981.1	LysE family transporter	-
B2B10_RS16455	-	3581311..3582918 (+)	1608	WP_012418982.1	peptide chain release factor 3	-
B2B10_RS16460	-	3582955..3583620 (+)	666	WP_012418983.1	hypothetical protein	-
B2B10_RS16465	bfr	3583693..3584169 (-)	477	WP_012418984.1	bacterioferritin	-
B2B10_RS16470	-	3584677..3584973 (+)	297	WP_012418985.1	(2Fe-2S)-binding protein	-
B2B10_RS16475	rpoN/rpoN1	3585034..3586455 (-)	1422	WP_114852117.1	RNA polymerase factor sigma-54	Machinery gene
B2B10_RS16480	-	3586454..3587089 (+)	636	WP_012418987.1	hypothetical protein	-
B2B10_RS16485	leuA	3587446..3589155 (+)	1710	WP_012418988.1	2-isopropylmalate synthase	-
B2B10_RS16490	-	3589235..3590524 (-)	1290	WP_114852118.1	amidase	-

Sequence

Protein

• Length: 473 a.a.
• Molecular weight: 52213.68 Da
• Isoelectric Point: 4.8049

>NTDB_id=218818 B2B10_RS16475 WP_114852117.1 3585034..3586455(-) (rpoN/rpoN1) [Bordetella avium strain SV1]
MQNIVPMTRPALELRPGQHLTLTPQLQQSIRLLQLSSLELEAEISLALADNPLLERDENPAEQVDSQREASIESDDSSPE
IETRLEEMPGSGGVYPDEDEPQQARADTLREHLLGQLALTRAGPRDAALVEVLIEELDDNGYLGSPLVEILQWLPPELEI
DEDELRVALSLLQSFDPPGIGARDMADCLLLQLRQPDLTRLPEAANPVILRCAREICVQHLSLLASGNLARLRDVLGVDE
PTLRTAHSLIVRLEPRPGRAWTVPAAEYALPDVLVSKTRQGWQAVLNSAAMPRLQINGLYAQMLANQRETAYAGLSAQLQ
QARWMIRNIEQRFDTILRVSQAIVMHQAAFFSEGPAAMRPLILKDIAAELGLHESTISRATTQKYMLTPFGTLELKYFFG
TGLATDSGNAASATAVQAHIRKMVSEENRAKPLSDSQIMERLASQGIVIARRTVAKYREALRIAPAAVRKAQG

Nucleotide

• Length: 1422 bp

>NTDB_id=218818 B2B10_RS16475 WP_114852117.1 3585034..3586455(-) (rpoN/rpoN1) [Bordetella avium strain SV1]
ATGCAAAATATTGTACCTATGACTCGTCCTGCTCTAGAACTTCGGCCTGGTCAGCATTTAACTTTGACCCCGCAACTGCA
ACAGTCGATCCGGCTCTTGCAGCTATCCTCATTGGAGCTGGAGGCGGAAATCTCCCTGGCCTTGGCCGACAATCCGTTGC
TGGAGCGCGACGAAAATCCGGCCGAACAGGTGGACTCGCAGCGCGAGGCAAGCATCGAAAGTGATGATTCCTCACCTGAA
ATCGAGACGCGTCTGGAAGAAATGCCGGGTTCGGGCGGCGTCTATCCAGACGAAGATGAGCCGCAACAGGCCCGCGCCGA
CACGCTGCGTGAGCATTTGCTGGGCCAACTGGCGCTGACCCGCGCCGGGCCGCGCGACGCGGCATTGGTTGAGGTGCTCA
TCGAGGAGCTGGACGACAACGGCTATCTGGGCTCGCCGCTGGTGGAAATCTTGCAGTGGCTGCCGCCGGAGCTGGAGATC
GATGAAGACGAGTTGCGTGTCGCTTTGAGCCTGTTGCAGTCTTTCGACCCGCCGGGCATCGGCGCCCGCGATATGGCGGA
CTGTCTGTTGCTGCAATTGCGCCAACCCGATCTGACTCGTTTGCCCGAAGCCGCCAACCCTGTCATCTTGCGTTGTGCGC
GCGAGATCTGCGTGCAGCATCTGTCCTTGCTGGCCTCAGGCAATTTGGCGCGCCTGCGTGACGTGCTGGGGGTGGACGAA
CCGACCTTGCGCACCGCCCACAGCCTTATCGTGCGCCTAGAGCCCCGACCCGGTCGGGCCTGGACCGTCCCGGCGGCCGA
GTATGCGCTGCCTGACGTGCTGGTGAGCAAAACGCGGCAGGGCTGGCAGGCCGTGCTCAATAGCGCCGCCATGCCCCGGC
TACAGATCAATGGGTTGTATGCGCAAATGTTGGCTAACCAGCGAGAAACGGCCTATGCGGGCCTGAGCGCACAGTTGCAG
CAGGCACGCTGGATGATCCGCAATATCGAACAACGATTCGACACGATTCTGCGCGTGTCGCAGGCCATTGTGATGCATCA
GGCGGCGTTTTTCAGTGAAGGTCCGGCTGCCATGCGTCCGCTCATTCTCAAAGACATTGCAGCTGAGTTGGGTTTGCACG
AATCCACGATTTCACGCGCCACAACACAGAAGTACATGCTCACTCCGTTCGGTACGCTGGAGCTCAAATATTTCTTCGGG
ACCGGTCTTGCCACGGATAGCGGGAATGCGGCTTCTGCCACCGCTGTGCAGGCGCATATCCGCAAGATGGTGTCAGAGGA
AAACCGCGCCAAGCCGCTATCTGATAGCCAGATCATGGAGCGATTGGCCAGTCAGGGCATCGTGATTGCCCGGCGTACCG
TGGCCAAGTACCGGGAAGCCTTGCGCATTGCGCCGGCGGCGGTGCGTAAGGCGCAGGGCTGA

Domains

Predicted by InterproScan.

• Sigma-54, DNA binding domain (Sigma54_DBD) (315-470)

• Sigma-54 factor, core binding domain (Sigma54_CBD) (101-300)

• Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID) (12-55)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoN/rpoN1	Ralstonia pseudosolanacearum GMI1000	48.915	100	0.524