Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   B2D07_RS08820 Genome accession   NZ_CP019913
Coordinates   2005431..2006798 (-) Length   455 a.a.
NCBI ID   WP_020875719.1    Uniprot ID   S7U1P4
Organism   Desulfococcus multivorans strain DSM 2059     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2000431..2011798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B2D07_RS08795 (B2D07_08845) trxA 2001740..2002198 (+) 459 WP_020875714.1 thioredoxin -
  B2D07_RS08800 (B2D07_08850) - 2002203..2003126 (+) 924 WP_144016406.1 hypothetical protein -
  B2D07_RS08805 (B2D07_08855) - 2003229..2003912 (+) 684 WP_020875716.1 outer membrane lipoprotein carrier protein LolA -
  B2D07_RS08810 (B2D07_08860) - 2004037..2004774 (-) 738 WP_020875717.1 YebC/PmpR family DNA-binding transcriptional regulator -
  B2D07_RS08815 (B2D07_08865) - 2004786..2005394 (-) 609 WP_020875718.1 RlmE family RNA methyltransferase -
  B2D07_RS08820 (B2D07_08870) radA 2005431..2006798 (-) 1368 WP_020875719.1 DNA repair protein RadA Machinery gene
  B2D07_RS08825 (B2D07_08875) - 2007079..2007957 (+) 879 WP_020875720.1 lytic murein transglycosylase -
  B2D07_RS08830 (B2D07_08880) - 2007960..2008196 (+) 237 WP_020875721.1 PLD nuclease N-terminal domain-containing protein -
  B2D07_RS08840 (B2D07_08890) - 2008538..2009032 (-) 495 WP_020875723.1 hypothetical protein -
  B2D07_RS08845 (B2D07_08895) - 2009534..2010193 (-) 660 WP_153302751.1 hypothetical protein -
  B2D07_RS08850 (B2D07_08900) - 2010473..2011216 (-) 744 WP_236610081.1 PaaI family thioesterase -
  B2D07_RS08855 (B2D07_08905) - 2011349..2011564 (-) 216 WP_020876443.1 ferredoxin family protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49209.15 Da        Isoelectric Point: 7.0101

>NTDB_id=218776 B2D07_RS08820 WP_020875719.1 2005431..2006798(-) (radA) [Desulfococcus multivorans strain DSM 2059]
MKKRGKLVFVCRTCGFQSPKWLGKCPDCGNWDTLAEEVQYNAASAGTKRRAIPGDTGPVSIDAVILEDECRIQTGIGEFD
RVLGGGLVPGSLVLIGGDPGIGKSTLMLQALYGLARQDAKVLYVSGEESVKQIRLRSKRLKTISNRLFVVSEVDLDTILQ
MVSSEKPDVLVIDSIQTMFNSDLPSAPGSVAQVRESAMRIMIMAKKSGIPTFIVGHVTKEGAIAGPRLLEHMVDTVLYFE
GDRSHVFRVLRAVKNRFGSTNEIGVFEMKEQGLEEVANPSAVFLSERPEQAPGSVVTACMEGTRPILVELQALASSTSFG
TPRRTILGLDQNRVALLVAVMEKKLGMHLMGHDIFMNVAGGVRVDEPAVDMGIIAAIASSFLDRPVPEGHIVMGEVGLTG
EVRAISQVETRVSEIRKMGFSRCLVPESNLRRMTAVTGIDLVGIQTVTQAVEALF

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=218776 B2D07_RS08820 WP_020875719.1 2005431..2006798(-) (radA) [Desulfococcus multivorans strain DSM 2059]
ATGAAAAAACGGGGAAAGCTGGTCTTTGTCTGCCGAACCTGCGGCTTTCAGAGCCCCAAATGGCTCGGAAAATGTCCGGA
CTGCGGCAATTGGGATACCCTTGCGGAGGAGGTTCAATACAATGCCGCTTCTGCCGGGACTAAGCGCCGGGCAATCCCGG
GCGACACCGGGCCGGTATCCATCGATGCGGTAATTCTGGAGGACGAATGTCGCATCCAAACCGGTATCGGGGAGTTCGAC
AGGGTGTTGGGCGGCGGCCTGGTGCCCGGATCTCTCGTCTTGATCGGCGGCGATCCCGGCATCGGAAAATCGACCCTGAT
GCTCCAGGCGCTCTACGGTCTGGCCCGACAGGATGCCAAGGTCCTCTATGTCTCCGGAGAAGAGTCCGTCAAACAGATCC
GATTGAGAAGCAAACGTCTGAAGACGATATCGAACCGGCTGTTCGTCGTCTCCGAGGTCGACCTCGATACCATCCTGCAG
ATGGTCTCGAGCGAAAAGCCCGATGTTCTGGTCATCGATTCCATCCAGACCATGTTCAACAGCGACCTCCCCTCAGCGCC
GGGAAGCGTCGCCCAGGTCCGGGAATCGGCCATGCGCATCATGATCATGGCCAAAAAGAGCGGCATTCCGACATTCATCG
TGGGCCATGTGACGAAAGAAGGTGCCATCGCCGGCCCCCGGCTTCTGGAACATATGGTCGATACGGTTCTCTACTTTGAA
GGGGATCGGAGCCATGTCTTCCGGGTGTTGCGGGCCGTGAAGAATCGATTCGGATCAACCAATGAGATCGGCGTGTTCGA
AATGAAGGAGCAGGGGCTCGAAGAGGTCGCCAACCCTTCGGCAGTCTTCCTTTCCGAGCGCCCCGAGCAGGCCCCGGGGT
CGGTGGTTACGGCCTGTATGGAAGGAACGCGCCCCATTCTGGTTGAACTCCAGGCCCTGGCCAGCAGCACCAGTTTCGGG
ACGCCCCGGCGGACCATACTGGGCCTCGACCAGAACCGTGTTGCCCTGCTGGTGGCGGTCATGGAAAAAAAACTGGGGAT
GCATCTCATGGGGCATGACATTTTCATGAACGTGGCCGGCGGCGTCAGGGTCGACGAGCCGGCCGTCGACATGGGCATCA
TCGCAGCCATTGCTTCCAGTTTTCTGGATCGCCCTGTTCCGGAGGGTCATATCGTCATGGGAGAGGTTGGACTGACCGGC
GAGGTTCGGGCCATCAGCCAGGTGGAGACCCGGGTGTCTGAAATCCGGAAAATGGGGTTCTCACGCTGTCTGGTGCCTGA
AAGCAACCTTCGCCGCATGACGGCCGTCACCGGCATCGATCTGGTCGGCATCCAGACGGTGACACAGGCCGTCGAGGCAT
TATTTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(83-221)

Subunit ChlI of Mg-chelatase (ChlI)

(343-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S7U1P4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

55.408

99.56

0.552
  radA Streptococcus pneumoniae Rx1

50.331

99.56

0.501
  radA Streptococcus pneumoniae D39

50.331

99.56

0.501
  radA Streptococcus pneumoniae R6

50.331

99.56

0.501
  radA Streptococcus pneumoniae TIGR4

50.331

99.56

0.501
  radA Streptococcus mitis NCTC 12261

50.331

99.56

0.501
  radA Streptococcus mitis SK321

50.331

99.56

0.501

Multiple sequence alignment