Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   CXR04_RS06600 Genome accession   NZ_CP025407
Coordinates   1568433..1569098 (+) Length   221 a.a.
NCBI ID   WP_101420942.1    Uniprot ID   -
Organism   Streptomyces sp. CMB-StM0423     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1563433..1574098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXR04_RS06580 (CXR04_06580) - 1563704..1564807 (-) 1104 WP_101420940.1 3-dehydroquinate synthase II -
  CXR04_RS06585 (CXR04_06585) - 1564862..1565725 (-) 864 WP_234380091.1 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase -
  CXR04_RS06590 (CXR04_06590) - 1565742..1567013 (-) 1272 WP_234380092.1 aspartate kinase -
  CXR04_RS06595 (CXR04_06595) - 1567306..1568436 (+) 1131 WP_101426230.1 sensor histidine kinase -
  CXR04_RS06600 (CXR04_06600) vraR 1568433..1569098 (+) 666 WP_101420942.1 response regulator transcription factor Regulator
  CXR04_RS06605 (CXR04_06605) - 1569117..1570007 (-) 891 WP_101420943.1 aromatic prenyltransferase -
  CXR04_RS06610 (CXR04_06610) - 1570250..1572886 (+) 2637 WP_101420944.1 LuxR family transcriptional regulator -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24071.78 Da        Isoelectric Point: 5.6249

>NTDB_id=218731 CXR04_RS06600 WP_101420942.1 1568433..1569098(+) (vraR) [Streptomyces sp. CMB-StM0423]
MIRVLMLDDQPLLRSGFRALLDAEDDIEVVAEAGDGKEGLALAREHLPDLALVDLSMPVMDGIETTRRIAADPALAHIHV
VILTNYGLDENVFNALRAGAAGFLVKDILPEDLLHAVRVAARGDALLAPSITRRLINKYVSQPPLDPSAVRGLEELTNRE
RESVALAAQGLSNDQIADRMVISPLTAKTHINRAMFKLHARDRAQLVVIAYESGLVTPRGR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=218731 CXR04_RS06600 WP_101420942.1 1568433..1569098(+) (vraR) [Streptomyces sp. CMB-StM0423]
GTGATCCGTGTGCTGATGCTCGACGACCAGCCGCTGCTGCGCAGCGGGTTCCGCGCGCTGCTCGACGCCGAGGACGACAT
CGAGGTGGTGGCGGAGGCGGGCGACGGCAAGGAAGGGCTGGCGCTGGCGCGGGAGCACCTGCCGGACCTCGCGCTGGTGG
ACCTGTCGATGCCGGTGATGGACGGCATCGAGACGACCAGGCGGATCGCCGCGGACCCGGCGCTCGCCCACATCCACGTG
GTGATCCTGACCAACTACGGCCTGGACGAGAACGTGTTCAACGCGCTGCGGGCGGGCGCGGCCGGGTTCCTGGTCAAGGA
CATCCTGCCCGAGGACCTGCTGCACGCCGTCCGCGTGGCCGCCCGCGGCGACGCACTGCTGGCGCCGTCGATCACCCGCA
GGCTGATCAACAAGTACGTGTCCCAGCCCCCGCTGGACCCCTCCGCCGTCCGCGGCCTGGAGGAGCTGACCAACCGGGAG
CGGGAGTCCGTCGCTCTGGCCGCGCAGGGTCTCTCCAACGACCAGATCGCCGACCGCATGGTGATCAGCCCGCTGACCGC
GAAGACCCATATCAACCGGGCGATGTTCAAGCTGCACGCGCGCGACCGCGCCCAACTGGTCGTCATCGCCTACGAGTCGG
GCCTGGTGACCCCGCGCGGCCGGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-118)

Bacterial regulatory proteins, luxR family (GerE)

(156-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.674

97.285

0.367

Multiple sequence alignment