Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   B2G52_RS04045 Genome accession   NZ_CP019894
Coordinates   712872..715904 (-) Length   1010 a.a.
NCBI ID   WP_045750181.1    Uniprot ID   -
Organism   Neisseria lactamica strain Y92-1009     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 707872..720904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B2G52_RS04000 (B2G52_04000) - 708262..708918 (-) 657 WP_003712589.1 hypothetical protein -
  B2G52_RS12270 - 709034..709198 (+) 165 WP_192881958.1 hypothetical protein -
  B2G52_RS04015 (B2G52_04015) - 709656..710051 (-) 396 WP_045750193.1 endonuclease domain-containing protein -
  B2G52_RS04020 (B2G52_04020) - 710217..710474 (-) 258 WP_003711592.1 SemiSWEET family transporter -
  B2G52_RS04025 (B2G52_04025) carA 710538..711668 (-) 1131 WP_003712586.1 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit -
  B2G52_RS12845 - 712194..712316 (+) 123 WP_268931295.1 hypothetical protein -
  B2G52_RS04045 (B2G52_04045) pilC 712872..715904 (-) 3033 WP_045750181.1 PilC family type IV pilus tip adhesin Machinery gene
  B2G52_RS11690 - 717268..717468 (+) 201 WP_155765805.1 hypothetical protein -
  B2G52_RS04065 (B2G52_04065) apbC 717651..718730 (-) 1080 WP_003714526.1 iron-sulfur cluster carrier protein ApbC -
  B2G52_RS04075 (B2G52_04075) - 719094..719603 (+) 510 WP_078836078.1 protein disulfide oxidoreductase -
  B2G52_RS04080 (B2G52_04080) hpaR 719911..720351 (+) 441 WP_003714529.1 homoprotocatechuate degradation operon regulator HpaR -

Sequence

Protein


Download         Length: 1010 a.a.        Molecular weight: 108389.69 Da        Isoelectric Point: 9.1486

>NTDB_id=218722 B2G52_RS04045 WP_045750181.1 712872..715904(-) (pilC) [Neisseria lactamica strain Y92-1009]
MPSGHRENKRKENDMKKTPKRHLLRHTAVYTAMLLAVSSQQAFGVGDTANFNFIVNDDGSVKGDQTPGGKGVRTGKKETF
PIGSSTRPGRNICRELGIKFDATQGCPFFAATTYELTYANTDTLLAGKNGGKLILGGGSAPLWGKVSGLDADNMAGRKTD
SWLTTVHKGKMGYDFTGLSCFLKGLGVSTGQSRQCPDLPFQFFFDFTNSALDSTSVGTSSDGLPIYKLTDHPWLGVSFQL
ALSDGKTPENWLAIQRDHTEVSKMITQPTGERSKGQVFALRAKLHMLGNSGSLNAQEIKLGEISMPNFAFMPHNENGNGR
TATIYKVREQGHIDVKLQLPSIGAGGCTRAQYTAAGPDGSQYAIVAPAPLGAGFPGKAAAVVTDPKSASSRILFYTLDKN
NKKNGGADYLPSKGFTEPVFAGRKAAIRLANGVSLSDSNINGITNGTFGIGSLGNNQDEWKTVLLRWTDRRDANDNQFNY
FNNAIDASTRGKLYSQQYRIRDDKNRNLGDIVNSPVTAVGDYLATAANDGMVHIFKKSGGGYNLKLSYIPGTMPRKNLDN
QDSDLAKDLHNFANENYTGGLYGVDGGFVLRQYKDRVFMFGAMGQGGKGAYALDLTKADSNQTGVSLFDVTNNGLGYTVG
TPQIGKTHNGKYAAFLASGYATKDINSGDNTTALYVYDLESSGTLIAKITVPGGKGGLSSPTLVDTDLDGTVDIAYAGDR
GGKMYRFDLGGNDPTRWSARAIFNGTKPITSAPAISQLKDKRVVIFGTGSDLTEDDVASQDIQHVYGIFDNDTESLPAED
GLGKGLLEQVLTKDGNMLFLSDYKRSDGSGDKGWVVKLQLGQRVTVKPTVVLRTAFVTIRNYNANGCGAETAFLGINTAD
GGRLTKKSARPVVPDNRVAKKVGEKKDAKGNNIPVGCMEKGTETVCPSGYVYPKLLTASYLDSQKTSDHPTTADGDAGGS
GNDNTPFQKSGNRCFFSKGVHTLLMNDMSDLDVAGPICNMKRVSWREVFF

Nucleotide


Download         Length: 3033 bp        

>NTDB_id=218722 B2G52_RS04045 WP_045750181.1 712872..715904(-) (pilC) [Neisseria lactamica strain Y92-1009]
ATGCCGTCCGGCCATCGGGAAAACAAACGGAAGGAAAACGATATGAAAAAAACACCCAAACGGCACTTGCTCCGCCATAC
TGCGGTTTATACCGCGATGCTCTTGGCGGTATCGTCCCAACAGGCGTTCGGCGTGGGCGATACTGCAAATTTCAATTTTA
TCGTCAACGACGACGGCAGCGTAAAAGGCGATCAGACACCCGGCGGCAAGGGCGTACGCACGGGTAAGAAAGAAACTTTC
CCAATCGGAAGCTCTACACGCCCGGGAAGAAACATATGTAGGGAACTGGGTATCAAATTTGATGCCACACAAGGGTGTCC
CTTTTTCGCCGCAACAACTTATGAACTCACCTACGCAAATACCGACACGCTGCTTGCGGGCAAGAACGGTGGGAAGCTGA
TTCTCGGCGGCGGTTCCGCCCCGCTGTGGGGCAAAGTTTCCGGGCTTGATGCCGACAATATGGCGGGGCGCAAAACCGAC
AGTTGGCTGACGACCGTCCATAAAGGGAAGATGGGTTACGATTTTACCGGCTTGAGTTGCTTCCTCAAGGGCTTGGGTGT
CTCGACGGGTCAAAGCCGCCAGTGTCCCGACCTGCCCTTCCAGTTTTTTTTCGACTTTACCAATAGCGCGCTCGACTCCA
CATCGGTGGGAACCAGTTCAGACGGCCTGCCGATATACAAGCTGACAGACCATCCGTGGCTGGGCGTTTCCTTCCAATTA
GCTTTATCGGATGGGAAAACGCCGGAAAACTGGCTCGCCATTCAGAGAGACCATACCGAAGTCAGCAAAATGATTACTCA
GCCGACAGGGGAAAGAAGCAAGGGTCAAGTATTCGCCCTGCGCGCCAAACTGCATATGCTGGGCAACTCCGGCAGCCTCA
ACGCCCAAGAAATCAAGCTGGGCGAGATTAGTATGCCCAACTTCGCCTTTATGCCGCATAACGAAAACGGCAATGGGCGG
ACAGCAACTATATATAAGGTACGCGAACAAGGCCATATCGACGTAAAACTCCAGCTTCCCAGCATAGGCGCGGGCGGCTG
TACGCGGGCGCAATATACCGCCGCCGGCCCGGACGGCAGCCAATATGCTATTGTCGCCCCAGCCCCTTTGGGCGCGGGTT
TCCCGGGCAAGGCGGCAGCGGTCGTTACCGATCCCAAGTCGGCAAGCAGCCGCATCCTCTTTTACACCTTGGATAAAAAC
AATAAGAAAAACGGCGGCGCGGATTATCTGCCAAGCAAAGGTTTTACCGAACCCGTCTTTGCCGGACGCAAGGCGGCAAT
CCGCCTGGCAAACGGCGTATCCTTGAGCGACAGCAATATTAACGGCATTACGAATGGCACGTTCGGTATCGGCAGCTTGG
GAAACAATCAAGACGAATGGAAAACCGTATTGCTGCGCTGGACCGACCGGCGCGATGCAAACGACAATCAGTTTAACTAT
TTTAACAATGCGATAGATGCTTCAACACGCGGCAAACTGTATAGCCAGCAATACCGCATCCGCGACGACAAGAATCGCAA
TTTGGGCGACATCGTCAACAGCCCGGTAACGGCGGTCGGCGACTATCTGGCAACCGCCGCCAACGACGGGATGGTGCATA
TCTTCAAAAAAAGCGGCGGCGGCTACAATCTGAAGCTCAGCTACATCCCCGGCACGATGCCGCGCAAAAACTTAGATAAC
CAAGATTCCGATTTGGCAAAAGACCTGCACAACTTTGCCAACGAAAACTACACGGGCGGTTTGTACGGCGTGGACGGCGG
CTTTGTCTTGCGCCAATACAAAGATCGCGTGTTTATGTTCGGCGCGATGGGTCAGGGCGGCAAAGGCGCGTATGCCTTGG
ATTTGACCAAGGCCGACAGCAACCAAACCGGCGTTTCCCTGTTTGACGTAACAAACAACGGCTTGGGCTACACCGTCGGC
ACGCCGCAAATCGGCAAAACCCACAACGGCAAATATGCCGCCTTCCTCGCTTCCGGCTATGCGACTAAAGATATTAACAG
CGGCGATAATACAACCGCGCTGTATGTATATGATTTGGAAAGCAGCGGTACTCTGATTGCAAAAATTACCGTACCCGGCG
GCAAGGGCGGGCTTTCGTCCCCCACGCTGGTGGATACGGATTTGGACGGCACGGTCGATATCGCCTATGCCGGCGACCGG
GGCGGCAAGATGTACCGATTTGATTTGGGCGGCAACGACCCGACCAGATGGTCTGCACGCGCCATTTTCAACGGCACAAA
ACCGATTACTTCCGCGCCCGCTATTTCCCAACTGAAAGACAAACGCGTCGTCATCTTCGGCACGGGCAGCGATTTGACTG
AGGATGATGTGGCAAGCCAAGACATCCAACACGTTTACGGTATTTTCGATAACGATACGGAATCTTTGCCGGCAGAAGAC
GGATTGGGCAAAGGGCTGCTTGAGCAAGTGCTGACAAAAGACGGCAATATGCTGTTCTTGAGCGACTACAAAAGGTCTGA
CGGCTCGGGCGACAAGGGCTGGGTAGTGAAATTGCAGCTCGGACAGCGCGTTACCGTCAAACCGACCGTGGTATTGCGTA
CCGCCTTTGTAACCATCCGCAACTACAATGCCAACGGCTGCGGCGCGGAAACCGCATTTTTGGGCATCAATACCGCCGAC
GGCGGCAGGCTGACGAAGAAAAGCGCGCGCCCCGTCGTGCCGGATAACCGCGTGGCAAAAAAAGTCGGCGAGAAAAAAGA
CGCAAAAGGCAACAATATCCCCGTGGGCTGTATGGAAAAAGGCACTGAAACCGTCTGCCCGAGCGGATATGTTTATCCGA
AACTGCTGACCGCAAGCTATTTGGACAGCCAAAAGACAAGCGATCACCCGACAACGGCAGACGGCGACGCGGGCGGCAGC
GGCAATGACAACACCCCCTTCCAAAAATCCGGCAACCGCTGCTTCTTCAGCAAAGGCGTGCACACGCTGCTGATGAACGA
TATGTCCGACTTGGACGTTGCCGGCCCGATCTGCAATATGAAACGGGTAAGCTGGCGCGAAGTCTTCTTCTAA

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(520-822)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

49.255

100

0.524

Multiple sequence alignment